(59 nodes) Periplasmic binding protein-like I network (Martelella mediterranea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tmpC	Purine nucleoside receptor A. (330 aa)
	rbsB_13	D-ribose-binding periplasmic protein precursor. (314 aa)
	rbsB_12	D-ribose-binding periplasmic protein precursor. (305 aa)
	gntR	Gluconate utilization system GNT-I transcriptional repressor. (328 aa)
	chvE_2	Multiple sugar-binding periplasmic receptor ChvE precursor. (356 aa)
	chvE_1	Multiple sugar-binding periplasmic receptor ChvE precursor. (357 aa)
	cytR_4	HTH-type transcriptional repressor CytR. (358 aa)
	yphF	ABC transporter periplasmic-binding protein YphF precursor. (323 aa)
	rbsB_11	D-ribose-binding periplasmic protein precursor. (315 aa)
	AQZ52874.1	Urea ABC transporter, urea binding protein. (449 aa)
	braC_6	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor. (363 aa)
	alsB_2	D-allose-binding periplasmic protein precursor. (314 aa)
	braC_5	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor. (400 aa)
	braC_4	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor. (405 aa)
	rbsB_10	D-ribose-binding periplasmic protein precursor. (350 aa)
	AQZ52037.1	Purine-binding protein precursor. (365 aa)
	AQZ52011.1	Bacterial regulatory protein, gntR family. (363 aa)
	rafR_2	Raffinose operon repressor. (364 aa)
	galS	Mgl repressor and galactose ultrainduction factor. (337 aa)
	cytR_3	HTH-type transcriptional repressor CytR. (335 aa)
	rbsB_9	D-ribose-binding periplasmic protein precursor. (331 aa)
	ccpA_6	Glucose-resistance amylase regulator. (347 aa)
	cytR_2	HTH-type transcriptional repressor CytR. (346 aa)
	ccpA_5	Glucose-resistance amylase regulator. (338 aa)
	degA_4	Degradation activator. (357 aa)
	rbsB_8	D-ribose-binding periplasmic protein precursor. (304 aa)
	lacR	Lactose operon repressor. (354 aa)
	degA_3	Degradation activator. (339 aa)
	rbsR_1	Ribose operon repressor. (348 aa)
	sbpA	Multiple sugar-binding periplasmic protein SbpA precursor. (370 aa)
	alsB_1	D-allose-binding periplasmic protein precursor. (338 aa)
	AQZ50937.1	Urea ABC transporter, urea binding protein. (401 aa)
	AQZ50916.1	D-ribose transporter subunit RbsB. (349 aa)
	AQZ50780.1	ABC-type uncharacterized transport system, periplasmic component. (324 aa)
	ccpA_4	Glucose-resistance amylase regulator. (336 aa)
	amiC_2	Aliphatic amidase expression-regulating protein. (431 aa)
	rafR_1	Raffinose operon repressor. (340 aa)
	ytfQ	ABC transporter periplasmic-binding protein YtfQ precursor. (316 aa)
	rbsB_7	D-ribose-binding periplasmic protein precursor. (314 aa)
	ccpA_3	Glucose-resistance amylase regulator. (336 aa)
	rbsB_6	D-ribose-binding periplasmic protein precursor. (317 aa)
	braC_3	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor. (383 aa)
	braC_2	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor. (402 aa)
	amiC_1	Aliphatic amidase expression-regulating protein. (420 aa)
	rbsB_5	D-ribose-binding periplasmic protein precursor. (336 aa)
	rbsB_4	D-ribose-binding periplasmic protein precursor. (311 aa)
	cytR_1	HTH-type transcriptional repressor CytR. (342 aa)
	rbsB_3	D-ribose-binding periplasmic protein precursor. (330 aa)
	rbsB_2	D-ribose-binding periplasmic protein precursor. (315 aa)
	AQZ49753.1	Hypothetical protein. (429 aa)
	AQZ49733.1	Leucine ABC transporter subunit substrate-binding protein LivK. (423 aa)
	ccpA_2	Glucose-resistance amylase regulator. (347 aa)
	rbsB_1	D-ribose-binding periplasmic protein precursor. (329 aa)
	degA_2	Degradation activator. (335 aa)
	ccpA_1	Glucose-resistance amylase regulator. (342 aa)
	AQZ49642.1	D-xylose ABC transporter, D-xylose-binding protein. (392 aa)
	degA_1	Degradation activator. (352 aa)
	braC_1	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor. (392 aa)
	AQZ49498.1	Purine-binding protein precursor. (338 aa)

Your Current Organism:

Martelella mediterranea

NCBI taxonomy Id: 1122214
Other names: M. mediterranea DSM 17316, Martelella mediterranea DSM 17316

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQZ49498.1	sbpA	Mame_00115	Mame_01646	Purine-binding protein precursor.	Multiple sugar-binding periplasmic protein SbpA precursor.	0.558
AQZ49642.1	AQZ50916.1	Mame_00259	Mame_01565	D-xylose ABC transporter, D-xylose-binding protein.	D-ribose transporter subunit RbsB.	0.404
AQZ49642.1	sbpA	Mame_00259	Mame_01646	D-xylose ABC transporter, D-xylose-binding protein.	Multiple sugar-binding periplasmic protein SbpA precursor.	0.411
AQZ49733.1	AQZ49753.1	Mame_00350	Mame_00370	Leucine ABC transporter subunit substrate-binding protein LivK.	Hypothetical protein.	0.907
AQZ49733.1	AQZ50937.1	Mame_00350	Mame_01586	Leucine ABC transporter subunit substrate-binding protein LivK.	Urea ABC transporter, urea binding protein.	0.900
AQZ49733.1	AQZ52874.1	Mame_00350	Mame_03569	Leucine ABC transporter subunit substrate-binding protein LivK.	Urea ABC transporter, urea binding protein.	0.900
AQZ49733.1	braC_1	Mame_00350	Mame_00143	Leucine ABC transporter subunit substrate-binding protein LivK.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.900
AQZ49733.1	braC_2	Mame_00350	Mame_00545	Leucine ABC transporter subunit substrate-binding protein LivK.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.900
AQZ49733.1	braC_3	Mame_00350	Mame_00664	Leucine ABC transporter subunit substrate-binding protein LivK.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.900
AQZ49733.1	braC_4	Mame_00350	Mame_02788	Leucine ABC transporter subunit substrate-binding protein LivK.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.900
AQZ49733.1	braC_5	Mame_00350	Mame_03218	Leucine ABC transporter subunit substrate-binding protein LivK.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.900
AQZ49733.1	braC_6	Mame_00350	Mame_03451	Leucine ABC transporter subunit substrate-binding protein LivK.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.900
AQZ49753.1	AQZ49733.1	Mame_00370	Mame_00350	Hypothetical protein.	Leucine ABC transporter subunit substrate-binding protein LivK.	0.907
AQZ49753.1	AQZ50937.1	Mame_00370	Mame_01586	Hypothetical protein.	Urea ABC transporter, urea binding protein.	0.900
AQZ49753.1	AQZ52874.1	Mame_00370	Mame_03569	Hypothetical protein.	Urea ABC transporter, urea binding protein.	0.900
AQZ49753.1	braC_1	Mame_00370	Mame_00143	Hypothetical protein.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.900
AQZ49753.1	braC_2	Mame_00370	Mame_00545	Hypothetical protein.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.900
AQZ49753.1	braC_3	Mame_00370	Mame_00664	Hypothetical protein.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.900
AQZ49753.1	braC_4	Mame_00370	Mame_02788	Hypothetical protein.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.900
AQZ49753.1	braC_5	Mame_00370	Mame_03218	Hypothetical protein.	Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.	0.904