(21 nodes) TRAP transporter solute receptor DctP superfamily network (Martelella mediterranea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	yiaO_8	Extracytoplasmic solute receptor protein YiaO. (332 aa)
	dctP_1	C4-dicarboxylate-binding periplasmic protein precursor. (336 aa)
	yiaO_1	Extracytoplasmic solute receptor protein YiaO. (335 aa)
	dctP_2	C4-dicarboxylate-binding periplasmic protein precursor. (348 aa)
	yiaO_2	Extracytoplasmic solute receptor protein YiaO. (333 aa)
	dctP_3	C4-dicarboxylate-binding periplasmic protein precursor. (407 aa)
	yiaO_3	Extracytoplasmic solute receptor protein YiaO. (331 aa)
	dctP_4	C4-dicarboxylate-binding periplasmic protein precursor. (330 aa)
	siaP_2	Neu5Ac-binding protein. (326 aa)
	AQZ51284.1	TRAP transporter solute receptor, DctP family; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (372 aa)
	siaP_3	Neu5Ac-binding protein. (328 aa)
	siaP_4	Neu5Ac-binding protein. (327 aa)
	yiaO_4	Extracytoplasmic solute receptor protein YiaO. (411 aa)
	siaP_5	Neu5Ac-binding protein. (348 aa)
	yiaO_5	Extracytoplasmic solute receptor protein YiaO. (340 aa)
	yiaO_6	Extracytoplasmic solute receptor protein YiaO. (333 aa)
	AQZ53087.1	TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component. (357 aa)
	AQZ53133.1	TRAP transporter solute receptor, DctP family; Part of the tripartite ATP-independent periplasmic (TRAP) transport system. (368 aa)
	siaP_6	Neu5Ac-binding protein. (327 aa)
	siaP_1	Neu5Ac-binding protein. (324 aa)
	yiaO_7	Extracytoplasmic solute receptor protein YiaO. (332 aa)

Your Current Organism:

Martelella mediterranea

NCBI taxonomy Id: 1122214
Other names: M. mediterranea DSM 17316, Martelella mediterranea DSM 17316

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQZ53087.1	dctP_3	Mame_03785	Mame_00528	TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.	C4-dicarboxylate-binding periplasmic protein precursor.	0.627
dctP_2	dctP_3	Mame_00411	Mame_00528	C4-dicarboxylate-binding periplasmic protein precursor.	C4-dicarboxylate-binding periplasmic protein precursor.	0.460
dctP_3	AQZ53087.1	Mame_00528	Mame_03785	C4-dicarboxylate-binding periplasmic protein precursor.	TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.	0.627
dctP_3	dctP_2	Mame_00528	Mame_00411	C4-dicarboxylate-binding periplasmic protein precursor.	C4-dicarboxylate-binding periplasmic protein precursor.	0.460
dctP_3	siaP_1	Mame_00528	Mame_01050	C4-dicarboxylate-binding periplasmic protein precursor.	Neu5Ac-binding protein.	0.403
dctP_3	siaP_2	Mame_00528	Mame_01808	C4-dicarboxylate-binding periplasmic protein precursor.	Neu5Ac-binding protein.	0.416
dctP_3	siaP_3	Mame_00528	Mame_02258	C4-dicarboxylate-binding periplasmic protein precursor.	Neu5Ac-binding protein.	0.619
dctP_3	siaP_4	Mame_00528	Mame_02259	C4-dicarboxylate-binding periplasmic protein precursor.	Neu5Ac-binding protein.	0.632
dctP_3	yiaO_1	Mame_00528	Mame_00132	C4-dicarboxylate-binding periplasmic protein precursor.	Extracytoplasmic solute receptor protein YiaO.	0.496
dctP_3	yiaO_7	Mame_00528	Mame_04137	C4-dicarboxylate-binding periplasmic protein precursor.	Extracytoplasmic solute receptor protein YiaO.	0.437
dctP_3	yiaO_8	Mame_00528	Mame_04147	C4-dicarboxylate-binding periplasmic protein precursor.	Extracytoplasmic solute receptor protein YiaO.	0.442
dctP_4	siaP_6	Mame_01718	Mame_04133	C4-dicarboxylate-binding periplasmic protein precursor.	Neu5Ac-binding protein.	0.549
dctP_4	yiaO_8	Mame_01718	Mame_04147	C4-dicarboxylate-binding periplasmic protein precursor.	Extracytoplasmic solute receptor protein YiaO.	0.603
siaP_1	dctP_3	Mame_01050	Mame_00528	Neu5Ac-binding protein.	C4-dicarboxylate-binding periplasmic protein precursor.	0.403
siaP_1	yiaO_8	Mame_01050	Mame_04147	Neu5Ac-binding protein.	Extracytoplasmic solute receptor protein YiaO.	0.772
siaP_2	dctP_3	Mame_01808	Mame_00528	Neu5Ac-binding protein.	C4-dicarboxylate-binding periplasmic protein precursor.	0.416
siaP_2	yiaO_8	Mame_01808	Mame_04147	Neu5Ac-binding protein.	Extracytoplasmic solute receptor protein YiaO.	0.446
siaP_3	dctP_3	Mame_02258	Mame_00528	Neu5Ac-binding protein.	C4-dicarboxylate-binding periplasmic protein precursor.	0.619
siaP_3	siaP_4	Mame_02258	Mame_02259	Neu5Ac-binding protein.	Neu5Ac-binding protein.	0.531
siaP_3	yiaO_1	Mame_02258	Mame_00132	Neu5Ac-binding protein.	Extracytoplasmic solute receptor protein YiaO.	0.756