(10 nodes) Periplasmic binding protein network (Martelella mediterranea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	yfmC	Ferric-citrate-binding protein. (336 aa)
	AQZ49816.1	Corrinoid ABC transporter substrate-binding protein. (355 aa)
	AQZ50676.1	Corrinoid ABC transporter substrate-binding protein. (286 aa)
	AQZ51018.1	Ferrichrome/ferrioxamine B periplasmic transporter. (378 aa)
	AQZ51225.1	ABC transporter substrate-binding protein. (338 aa)
	yfiY_1	Putative siderophore-binding lipoprotein YfiY precursor. (310 aa)
	yfiY_2	Putative siderophore-binding lipoprotein YfiY precursor. (301 aa)
	AQZ51369.1	Corrinoid ABC transporter substrate-binding protein. (362 aa)
	AQZ52203.1	Ferrichrome/ferrioxamine B periplasmic transporter. (374 aa)
	hmuT	Hemin-binding periplasmic protein HmuT precursor. (290 aa)

Your Current Organism:

Martelella mediterranea

NCBI taxonomy Id: 1122214
Other names: M. mediterranea DSM 17316, Martelella mediterranea DSM 17316

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQZ49816.1	AQZ51018.1	Mame_00433	Mame_01669	Corrinoid ABC transporter substrate-binding protein.	Ferrichrome/ferrioxamine B periplasmic transporter.	0.487
AQZ51018.1	AQZ49816.1	Mame_01669	Mame_00433	Ferrichrome/ferrioxamine B periplasmic transporter.	Corrinoid ABC transporter substrate-binding protein.	0.487
AQZ51018.1	AQZ51369.1	Mame_01669	Mame_02031	Ferrichrome/ferrioxamine B periplasmic transporter.	Corrinoid ABC transporter substrate-binding protein.	0.555
AQZ51369.1	AQZ51018.1	Mame_02031	Mame_01669	Corrinoid ABC transporter substrate-binding protein.	Ferrichrome/ferrioxamine B periplasmic transporter.	0.555
AQZ51369.1	AQZ52203.1	Mame_02031	Mame_02880	Corrinoid ABC transporter substrate-binding protein.	Ferrichrome/ferrioxamine B periplasmic transporter.	0.415
AQZ52203.1	AQZ51369.1	Mame_02880	Mame_02031	Ferrichrome/ferrioxamine B periplasmic transporter.	Corrinoid ABC transporter substrate-binding protein.	0.415
yfiY_1	yfmC	Mame_01970	Mame_03716	Putative siderophore-binding lipoprotein YfiY precursor.	Ferric-citrate-binding protein.	0.426
yfiY_2	yfmC	Mame_01974	Mame_03716	Putative siderophore-binding lipoprotein YfiY precursor.	Ferric-citrate-binding protein.	0.452
yfmC	yfiY_1	Mame_03716	Mame_01970	Ferric-citrate-binding protein.	Putative siderophore-binding lipoprotein YfiY precursor.	0.426
yfmC	yfiY_2	Mame_03716	Mame_01974	Ferric-citrate-binding protein.	Putative siderophore-binding lipoprotein YfiY precursor.	0.452