(39 nodes) Butanoate metabolism network (Martelella mediterranea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gabD_1	Succinate-semialdehyde dehydrogenase [NADP(+)] GabD; Belongs to the aldehyde dehydrogenase family. (494 aa)
	mhpF	Acetaldehyde dehydrogenase; Catalyzes the conversion of acetaldehyde to acetyl-CoA, using NAD(+) and coenzyme A. Is the final enzyme in the meta-cleavage pathway for the degradation of aromatic compounds. (314 aa)
	fadB_1	Putative enoyl-CoA hydratase. (352 aa)
	echA8_2	Putative enoyl-CoA hydratase echA8. (245 aa)
	yngG_1	Hydroxymethylglutaryl-CoA lyase YngG. (315 aa)
	fadB_2	Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family. (692 aa)
	pldh-t_2	Pyridoxal 4-dehydrogenase. (261 aa)
	yngG_2	Hydroxymethylglutaryl-CoA lyase YngG. (285 aa)
	thlA	Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (386 aa)
	fadA_1	Putative acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	fadN_1	Putative 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family. (767 aa)
	echA8_3	Putative enoyl-CoA hydratase echA8. (264 aa)
	caiD_2	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
	gabD_2	Succinate-semialdehyde dehydrogenase [NADP(+)] GabD. (492 aa)
	fadB_3	Putative enoyl-CoA hydratase. (255 aa)
	phbA_1	Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
	mmgB_2	Putative 3-hydroxybutyryl-CoA dehydrogenase. (293 aa)
	bdhA_2	D-beta-hydroxybutyrate dehydrogenase. (258 aa)
	fadA_2	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (400 aa)
	ilvX	Putative acetolactate synthase large subunit IlvX. (519 aa)
	fadB_4	Fatty acid oxidation complex subunit alpha. (655 aa)
	bioK_1	L-Lysine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (451 aa)
	gadB	Glutamate decarboxylase beta; Belongs to the group II decarboxylase family. (464 aa)
	sdhC	Succinate dehydrogenase cytochrome b556 subunit. (130 aa)
	AQZ51422.1	Succinate dehydrogenase cytochrome b556 small membrane subunit. (126 aa)
	sdhA	Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (613 aa)
	sdhB	Succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (259 aa)
	ilvI	Acetolactate synthase isozyme 3 large subunit. (590 aa)
	ilvH	Acetolactate synthase isozyme 3 small subunit. (190 aa)
	budC_2	Diacetyl reductase. (246 aa)
	AQZ52150.1	Arylmalonate decarboxylase. (264 aa)
	budC_3	L-2,3-butanediol dehydrogenase. (259 aa)
	scoA	Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit A. (237 aa)
	scoB	Putative succinyl-CoA:3-ketoacid coenzyme A transferase subunit B. (221 aa)
	phbA_2	Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (391 aa)
	fadB_5	Fatty acid oxidation complex subunit alpha. (656 aa)
	budC_4	Diacetyl reductase. (248 aa)
	paaF_2	2,3-dehydroadipyl-CoA hydratase. (257 aa)
	AQZ53084.1	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (385 aa)

Your Current Organism:

Martelella mediterranea

NCBI taxonomy Id: 1122214
Other names: M. mediterranea DSM 17316, Martelella mediterranea DSM 17316

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQZ51422.1	AQZ52150.1	Mame_02084	Mame_02827	Succinate dehydrogenase cytochrome b556 small membrane subunit.	Arylmalonate decarboxylase.	0.900
AQZ51422.1	gabD_1	Mame_02084	Mame_00096	Succinate dehydrogenase cytochrome b556 small membrane subunit.	Succinate-semialdehyde dehydrogenase [NADP(+)] GabD; Belongs to the aldehyde dehydrogenase family.	0.904
AQZ51422.1	gabD_2	Mame_02084	Mame_00790	Succinate dehydrogenase cytochrome b556 small membrane subunit.	Succinate-semialdehyde dehydrogenase [NADP(+)] GabD.	0.904
AQZ51422.1	sdhA	Mame_02084	Mame_02085	Succinate dehydrogenase cytochrome b556 small membrane subunit.	Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.	0.998
AQZ51422.1	sdhB	Mame_02084	Mame_02088	Succinate dehydrogenase cytochrome b556 small membrane subunit.	Succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	0.999
AQZ51422.1	sdhC	Mame_02084	Mame_02083	Succinate dehydrogenase cytochrome b556 small membrane subunit.	Succinate dehydrogenase cytochrome b556 subunit.	0.999
AQZ52150.1	AQZ51422.1	Mame_02827	Mame_02084	Arylmalonate decarboxylase.	Succinate dehydrogenase cytochrome b556 small membrane subunit.	0.900
AQZ52150.1	sdhA	Mame_02827	Mame_02085	Arylmalonate decarboxylase.	Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.	0.902
AQZ52150.1	sdhB	Mame_02827	Mame_02088	Arylmalonate decarboxylase.	Succinate dehydrogenase iron-sulfur subunit; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.	0.900
AQZ52150.1	sdhC	Mame_02827	Mame_02083	Arylmalonate decarboxylase.	Succinate dehydrogenase cytochrome b556 subunit.	0.900
AQZ53084.1	caiD_2	Mame_03782	Mame_00527	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.572
AQZ53084.1	echA8_2	Mame_03782	Mame_00185	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Putative enoyl-CoA hydratase echA8.	0.572
AQZ53084.1	echA8_3	Mame_03782	Mame_00522	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Putative enoyl-CoA hydratase echA8.	0.585
AQZ53084.1	fadA_1	Mame_03782	Mame_00508	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Putative acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	0.618
AQZ53084.1	fadA_2	Mame_03782	Mame_01580	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.600
AQZ53084.1	fadB_1	Mame_03782	Mame_00180	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Putative enoyl-CoA hydratase.	0.572
AQZ53084.1	fadB_2	Mame_03782	Mame_00430	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.	0.981
AQZ53084.1	fadB_3	Mame_03782	Mame_00848	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Putative enoyl-CoA hydratase.	0.572
AQZ53084.1	fadB_4	Mame_03782	Mame_01854	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty acid oxidation complex subunit alpha.	0.983
AQZ53084.1	fadB_5	Mame_03782	Mame_03722	acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.	Fatty acid oxidation complex subunit alpha.	0.981