(34 nodes) Fatty acid biosynthesis network (Nevskia soli)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000711955_00185	Unannotated protein. (167 aa)
	GCA_000711955_03105	Unannotated protein. (509 aa)
	GCA_000711955_03190	Unannotated protein. (319 aa)
	GCA_000711955_03413	Unannotated protein. (652 aa)
	GCA_000711955_03484	Unannotated protein. (289 aa)
	GCA_000711955_03863	Unannotated protein. (556 aa)
	GCA_000711955_04045	Unannotated protein. (328 aa)
	GCA_000711955_04231	Unannotated protein. (510 aa)
	GCA_000711955_04660	Unannotated protein. (514 aa)
	GCA_000711955_03096	Unannotated protein. (311 aa)
	GCA_000711955_03094	Unannotated protein. (276 aa)
	GCA_000711955_03093	Unannotated protein. (290 aa)
	GCA_000711955_02924	Unannotated protein. (266 aa)
	GCA_000711955_02888	Unannotated protein. (413 aa)
	GCA_000711955_02886	Unannotated protein. (252 aa)
	GCA_000711955_02885	Unannotated protein. (314 aa)
	GCA_000711955_02566	Unannotated protein. (561 aa)
	GCA_000711955_02358	Unannotated protein. (251 aa)
	GCA_000711955_02286	Unannotated protein. (253 aa)
	GCA_000711955_02095	Unannotated protein. (250 aa)
	GCA_000711955_01395	Unannotated protein. (162 aa)
	GCA_000711955_01394	Unannotated protein. (451 aa)
	GCA_000711955_01379	Unannotated protein. (552 aa)
	GCA_000711955_01210	Unannotated protein. (264 aa)
	GCA_000711955_01101	Unannotated protein. (145 aa)
	GCA_000711955_01100	Unannotated protein. (264 aa)
	GCA_000711955_01099	Unannotated protein. (391 aa)
	GCA_000711955_01097	Unannotated protein. (101 aa)
	GCA_000711955_00989	Unannotated protein. (373 aa)
	GCA_000711955_00813	Unannotated protein. (506 aa)
	GCA_000711955_00799	Unannotated protein. (263 aa)
	GCA_000711955_00573	Unannotated protein. (561 aa)
	GCA_000711955_00528	Unannotated protein. (632 aa)
	GCA_000711955_00190	Unannotated protein. (336 aa)

Your Current Organism:

Nevskia soli

NCBI taxonomy Id: 1122604
Other names: N. soli DSM 19509, Nevskia soli DSM 19509, Nevskia soli GR15-1, Nevskia soli NBRC 106401

Send network to Cytoscape

Export your current network:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000711955_00185	GCA_000711955_00190	Unannotated protein.	Unannotated protein.	0.993
GCA_000711955_00185	GCA_000711955_00799	Unannotated protein.	Unannotated protein.	0.797
GCA_000711955_00185	GCA_000711955_00989	Unannotated protein.	Unannotated protein.	0.925
GCA_000711955_00185	GCA_000711955_01097	Unannotated protein.	Unannotated protein.	0.635
GCA_000711955_00185	GCA_000711955_01099	Unannotated protein.	Unannotated protein.	0.984
GCA_000711955_00185	GCA_000711955_01100	Unannotated protein.	Unannotated protein.	0.928
GCA_000711955_00185	GCA_000711955_01101	Unannotated protein.	Unannotated protein.	0.955
GCA_000711955_00185	GCA_000711955_01210	Unannotated protein.	Unannotated protein.	0.797
GCA_000711955_00185	GCA_000711955_01394	Unannotated protein.	Unannotated protein.	0.739
GCA_000711955_00185	GCA_000711955_01395	Unannotated protein.	Unannotated protein.	0.979
GCA_000711955_00185	GCA_000711955_02286	Unannotated protein.	Unannotated protein.	0.862
GCA_000711955_00185	GCA_000711955_02358	Unannotated protein.	Unannotated protein.	0.499
GCA_000711955_00185	GCA_000711955_02885	Unannotated protein.	Unannotated protein.	0.971
GCA_000711955_00185	GCA_000711955_02886	Unannotated protein.	Unannotated protein.	0.881
GCA_000711955_00185	GCA_000711955_02888	Unannotated protein.	Unannotated protein.	0.990
GCA_000711955_00185	GCA_000711955_02924	Unannotated protein.	Unannotated protein.	0.931
GCA_000711955_00185	GCA_000711955_03093	Unannotated protein.	Unannotated protein.	0.875
GCA_000711955_00185	GCA_000711955_03094	Unannotated protein.	Unannotated protein.	0.856
GCA_000711955_00185	GCA_000711955_03096	Unannotated protein.	Unannotated protein.	0.959
GCA_000711955_00185	GCA_000711955_03190	Unannotated protein.	Unannotated protein.	0.971