(101 nodes) Mixed, incl. Signal, and Glycosyltransferase like family 2 network (Niabella aurantiaca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000374125_00179	Unannotated protein. (572 aa)
	GCA_000374125_00284	Unannotated protein. (232 aa)
	GCA_000374125_00285	Unannotated protein. (551 aa)
	GCA_000374125_00358	Unannotated protein. (429 aa)
	GCA_000374125_00359	Unannotated protein. (1062 aa)
	GCA_000374125_00360	Unannotated protein. (594 aa)
	GCA_000374125_00361	Unannotated protein. (407 aa)
	GCA_000374125_00363	Unannotated protein. (459 aa)
	GCA_000374125_00364	Unannotated protein. (537 aa)
	GCA_000374125_00365	Unannotated protein. (697 aa)
	GCA_000374125_00366	Unannotated protein. (266 aa)
	GCA_000374125_00367	Unannotated protein. (367 aa)
	GCA_000374125_00368	Unannotated protein. (871 aa)
	GCA_000374125_00371	Unannotated protein. (69 aa)
	GCA_000374125_00372	Unannotated protein. (397 aa)
	GCA_000374125_00373	Unannotated protein. (304 aa)
	GCA_000374125_00655	Unannotated protein. (475 aa)
	GCA_000374125_00734	Unannotated protein. (345 aa)
	GCA_000374125_00878	Unannotated protein. (245 aa)
	GCA_000374125_00925	Unannotated protein. (414 aa)
	GCA_000374125_01105	Unannotated protein. (414 aa)
	GCA_000374125_01198	Unannotated protein. (530 aa)
	GCA_000374125_01269	Unannotated protein. (538 aa)
	GCA_000374125_01271	Unannotated protein. (558 aa)
	GCA_000374125_01279	Unannotated protein. (263 aa)
	GCA_000374125_01290	Unannotated protein. (296 aa)
	GCA_000374125_01338	Unannotated protein. (229 aa)
	GCA_000374125_01381	Unannotated protein. (987 aa)
	GCA_000374125_01382	Unannotated protein. (502 aa)
	GCA_000374125_01438	Unannotated protein. (235 aa)
	GCA_000374125_01576	Unannotated protein. (1059 aa)
	GCA_000374125_01668	Unannotated protein. (360 aa)
	GCA_000374125_01670	Unannotated protein. (898 aa)
	GCA_000374125_01671	Unannotated protein. (663 aa)
	GCA_000374125_01672	Unannotated protein. (185 aa)
	GCA_000374125_01673	Unannotated protein. (238 aa)
	GCA_000374125_01730	Unannotated protein. (941 aa)
	GCA_000374125_01731	Unannotated protein. (182 aa)
	GCA_000374125_01732	Unannotated protein. (288 aa)
	GCA_000374125_01733	Unannotated protein. (462 aa)
	GCA_000374125_01781	Unannotated protein. (343 aa)
	GCA_000374125_01782	Unannotated protein. (779 aa)
	GCA_000374125_01784	Unannotated protein. (1200 aa)
	GCA_000374125_01859	Unannotated protein. (300 aa)
	GCA_000374125_01860	Unannotated protein. (240 aa)
	GCA_000374125_01861	Unannotated protein. (184 aa)
	GCA_000374125_02094	Unannotated protein. (576 aa)
	GCA_000374125_02230	Unannotated protein. (131 aa)
	GCA_000374125_02231	Unannotated protein. (559 aa)
	GCA_000374125_02232	Unannotated protein. (577 aa)
	GCA_000374125_02246	Unannotated protein. (607 aa)
	GCA_000374125_02271	Unannotated protein. (257 aa)
	GCA_000374125_02285	Unannotated protein. (149 aa)
	GCA_000374125_02381	Unannotated protein. (313 aa)
	GCA_000374125_02408	Unannotated protein. (574 aa)
	GCA_000374125_02458	Unannotated protein. (232 aa)
	GCA_000374125_02490	Unannotated protein. (383 aa)
	GCA_000374125_02659	Unannotated protein. (174 aa)
	GCA_000374125_02662	Unannotated protein. (481 aa)
	GCA_000374125_02764	Unannotated protein. (846 aa)
	GCA_000374125_02775	Unannotated protein. (833 aa)
	GCA_000374125_02778	Unannotated protein. (526 aa)
	GCA_000374125_02790	Unannotated protein. (202 aa)
	GCA_000374125_02791	Unannotated protein. (135 aa)
	GCA_000374125_02792	Unannotated protein. (344 aa)
	GCA_000374125_02793	Unannotated protein. (472 aa)
	GCA_000374125_02794	Unannotated protein. (225 aa)
	GCA_000374125_02795	Unannotated protein. (543 aa)
	GCA_000374125_02796	Unannotated protein. (369 aa)
	GCA_000374125_02807	Unannotated protein. (241 aa)
	GCA_000374125_02884	Unannotated protein. (284 aa)
	GCA_000374125_02885	Unannotated protein. (620 aa)
	GCA_000374125_02886	Unannotated protein. (1034 aa)
	GCA_000374125_02887	Unannotated protein. (221 aa)
	GCA_000374125_03121	Unannotated protein. (236 aa)
	GCA_000374125_03123	Unannotated protein. (454 aa)
	GCA_000374125_03225	Unannotated protein. (187 aa)
	GCA_000374125_03307	Unannotated protein. (734 aa)
	GCA_000374125_03799	Unannotated protein. (663 aa)
	GCA_000374125_04080	Unannotated protein. (380 aa)
	GCA_000374125_04137	Unannotated protein. (335 aa)
	GCA_000374125_04141	Unannotated protein. (477 aa)
	GCA_000374125_04230	Unannotated protein. (793 aa)
	GCA_000374125_04231	Unannotated protein. (383 aa)
	GCA_000374125_04232	Unannotated protein. (921 aa)
	GCA_000374125_04233	Unannotated protein. (235 aa)
	GCA_000374125_04235	Unannotated protein. (329 aa)
	GCA_000374125_04321	Unannotated protein. (308 aa)
	GCA_000374125_04322	Unannotated protein. (941 aa)
	GCA_000374125_04323	Unannotated protein. (407 aa)
	GCA_000374125_04324	Unannotated protein. (984 aa)
	GCA_000374125_04325	Unannotated protein. (412 aa)
	GCA_000374125_04326	Unannotated protein. (857 aa)
	GCA_000374125_04327	Unannotated protein. (45 aa)
	GCA_000374125_04344	Unannotated protein. (663 aa)
	GCA_000374125_04357	Unannotated protein. (308 aa)
	GCA_000374125_04667	Unannotated protein. (539 aa)
	GCA_000374125_04748	Unannotated protein. (325 aa)
	GCA_000374125_04750	Unannotated protein. (434 aa)
	GCA_000374125_04905	Unannotated protein. (325 aa)
	GCA_000374125_04907	Unannotated protein. (412 aa)

Your Current Organism:

Niabella aurantiaca

NCBI taxonomy Id: 1122605
Other names: N. aurantiaca DSM 17617, Niabella aurantiaca DSM 17617

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000374125_00179	GCA_000374125_00363	Unannotated protein.	Unannotated protein.	0.558
GCA_000374125_00179	GCA_000374125_00364	Unannotated protein.	Unannotated protein.	0.702
GCA_000374125_00179	GCA_000374125_00368	Unannotated protein.	Unannotated protein.	0.480
GCA_000374125_00179	GCA_000374125_00655	Unannotated protein.	Unannotated protein.	0.422
GCA_000374125_00179	GCA_000374125_00878	Unannotated protein.	Unannotated protein.	0.601
GCA_000374125_00179	GCA_000374125_01198	Unannotated protein.	Unannotated protein.	0.432
GCA_000374125_00179	GCA_000374125_01271	Unannotated protein.	Unannotated protein.	0.464
GCA_000374125_00179	GCA_000374125_01382	Unannotated protein.	Unannotated protein.	0.472
GCA_000374125_00179	GCA_000374125_01438	Unannotated protein.	Unannotated protein.	0.439
GCA_000374125_00179	GCA_000374125_01576	Unannotated protein.	Unannotated protein.	0.725
GCA_000374125_00179	GCA_000374125_01730	Unannotated protein.	Unannotated protein.	0.635
GCA_000374125_00179	GCA_000374125_01782	Unannotated protein.	Unannotated protein.	0.508
GCA_000374125_00179	GCA_000374125_02246	Unannotated protein.	Unannotated protein.	0.458
GCA_000374125_00179	GCA_000374125_02271	Unannotated protein.	Unannotated protein.	0.414
GCA_000374125_00179	GCA_000374125_02490	Unannotated protein.	Unannotated protein.	0.631
GCA_000374125_00179	GCA_000374125_02764	Unannotated protein.	Unannotated protein.	0.665
GCA_000374125_00179	GCA_000374125_02778	Unannotated protein.	Unannotated protein.	0.551
GCA_000374125_00179	GCA_000374125_02795	Unannotated protein.	Unannotated protein.	0.448
GCA_000374125_00179	GCA_000374125_03121	Unannotated protein.	Unannotated protein.	0.404
GCA_000374125_00179	GCA_000374125_03123	Unannotated protein.	Unannotated protein.	0.502