(69 nodes) Cellular polysaccharide metabolic process network (Niabella aurantiaca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000374125_02710	Unannotated protein. (384 aa)
	GCA_000374125_00006	Unannotated protein. (1052 aa)
	GCA_000374125_00100	Unannotated protein. (1115 aa)
	GCA_000374125_00122	Unannotated protein. (332 aa)
	GCA_000374125_00204	Unannotated protein. (275 aa)
	GCA_000374125_00287	Unannotated protein. (804 aa)
	GCA_000374125_00313	Unannotated protein. (487 aa)
	GCA_000374125_00314	Unannotated protein. (426 aa)
	GCA_000374125_00320	Unannotated protein. (654 aa)
	GCA_000374125_00334	Unannotated protein. (468 aa)
	GCA_000374125_00348	Unannotated protein. (1044 aa)
	GCA_000374125_00383	Unannotated protein. (727 aa)
	GCA_000374125_00571	Unannotated protein. (1029 aa)
	GCA_000374125_00574	Unannotated protein. (784 aa)
	GCA_000374125_00585	Unannotated protein. (416 aa)
	GCA_000374125_00642	Unannotated protein. (1039 aa)
	GCA_000374125_00724	Unannotated protein. (1047 aa)
	GCA_000374125_00799	Unannotated protein. (343 aa)
	GCA_000374125_00805	Unannotated protein. (345 aa)
	GCA_000374125_00891	Unannotated protein. (414 aa)
	GCA_000374125_00915	Unannotated protein. (235 aa)
	GCA_000374125_01159	Unannotated protein. (1066 aa)
	GCA_000374125_01349	Unannotated protein. (1081 aa)
	GCA_000374125_01452	Unannotated protein. (303 aa)
	GCA_000374125_01486	Unannotated protein. (298 aa)
	GCA_000374125_01504	Unannotated protein. (308 aa)
	GCA_000374125_01566	Unannotated protein. (318 aa)
	GCA_000374125_01568	Unannotated protein. (315 aa)
	GCA_000374125_01689	Unannotated protein. (1093 aa)
	GCA_000374125_01702	Unannotated protein. (471 aa)
	GCA_000374125_01848	Unannotated protein. (1135 aa)
	GCA_000374125_01896	Unannotated protein. (203 aa)
	GCA_000374125_02030	Unannotated protein. (270 aa)
	GCA_000374125_02191	Unannotated protein. (649 aa)
	GCA_000374125_02192	Unannotated protein. (584 aa)
	GCA_000374125_02207	Unannotated protein. (173 aa)
	GCA_000374125_02244	Unannotated protein. (1004 aa)
	GCA_000374125_02265	Unannotated protein. (722 aa)
	GCA_000374125_02275	Unannotated protein. (265 aa)
	GCA_000374125_02378	Unannotated protein. (687 aa)
	GCA_000374125_02544	Unannotated protein. (1064 aa)
	GCA_000374125_02626	Unannotated protein. (114 aa)
	GCA_000374125_02629	Unannotated protein. (319 aa)
	GCA_000374125_02881	Unannotated protein. (1031 aa)
	GCA_000374125_02905	Unannotated protein. (766 aa)
	GCA_000374125_03201	Unannotated protein. (799 aa)
	GCA_000374125_03206	Unannotated protein. (298 aa)
	GCA_000374125_03210	Unannotated protein. (361 aa)
	GCA_000374125_03229	Unannotated protein. (292 aa)
	GCA_000374125_03470	Unannotated protein. (260 aa)
	GCA_000374125_03532	Unannotated protein. (510 aa)
	GCA_000374125_03677	Unannotated protein. (1079 aa)
	GCA_000374125_03743	Unannotated protein. (262 aa)
	GCA_000374125_03745	Unannotated protein. (829 aa)
	GCA_000374125_03758	Unannotated protein. (466 aa)
	GCA_000374125_03773	Unannotated protein. (1075 aa)
	GCA_000374125_03906	Unannotated protein. (1073 aa)
	GCA_000374125_04101	Unannotated protein. (267 aa)
	GCA_000374125_04102	Unannotated protein. (527 aa)
	GCA_000374125_04141	Unannotated protein. (477 aa)
	GCA_000374125_04160	Unannotated protein. (700 aa)
	GCA_000374125_04399	Unannotated protein. (516 aa)
	GCA_000374125_04416	Unannotated protein. (1070 aa)
	GCA_000374125_04453	Unannotated protein. (791 aa)
	GCA_000374125_04457	Unannotated protein. (285 aa)
	GCA_000374125_04475	Unannotated protein. (246 aa)
	GCA_000374125_04718	Unannotated protein. (1114 aa)
	GCA_000374125_04892	Unannotated protein. (386 aa)
	GCA_000374125_04931	Unannotated protein. (329 aa)

Your Current Organism:

Niabella aurantiaca

NCBI taxonomy Id: 1122605
Other names: N. aurantiaca DSM 17617, Niabella aurantiaca DSM 17617

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000374125_00204	GCA_000374125_00585	Unannotated protein.	Unannotated protein.	0.836
GCA_000374125_00204	GCA_000374125_00805	Unannotated protein.	Unannotated protein.	0.426
GCA_000374125_00204	GCA_000374125_00915	Unannotated protein.	Unannotated protein.	0.911
GCA_000374125_00204	GCA_000374125_02207	Unannotated protein.	Unannotated protein.	0.988
GCA_000374125_00287	GCA_000374125_03201	Unannotated protein.	Unannotated protein.	0.727
GCA_000374125_00287	GCA_000374125_04453	Unannotated protein.	Unannotated protein.	0.742
GCA_000374125_00287	GCA_000374125_04475	Unannotated protein.	Unannotated protein.	0.854
GCA_000374125_00287	GCA_000374125_04892	Unannotated protein.	Unannotated protein.	0.571
GCA_000374125_00313	GCA_000374125_00314	Unannotated protein.	Unannotated protein.	0.998
GCA_000374125_00313	GCA_000374125_00320	Unannotated protein.	Unannotated protein.	0.996
GCA_000374125_00313	GCA_000374125_00334	Unannotated protein.	Unannotated protein.	0.811
GCA_000374125_00313	GCA_000374125_02030	Unannotated protein.	Unannotated protein.	0.979
GCA_000374125_00313	GCA_000374125_04892	Unannotated protein.	Unannotated protein.	0.540
GCA_000374125_00314	GCA_000374125_00313	Unannotated protein.	Unannotated protein.	0.998
GCA_000374125_00314	GCA_000374125_00320	Unannotated protein.	Unannotated protein.	0.993
GCA_000374125_00314	GCA_000374125_00334	Unannotated protein.	Unannotated protein.	0.671
GCA_000374125_00314	GCA_000374125_00891	Unannotated protein.	Unannotated protein.	0.405
GCA_000374125_00314	GCA_000374125_02030	Unannotated protein.	Unannotated protein.	0.996
GCA_000374125_00314	GCA_000374125_04892	Unannotated protein.	Unannotated protein.	0.548
GCA_000374125_00320	GCA_000374125_00313	Unannotated protein.	Unannotated protein.	0.996