(35 nodes) Tetrapyrrole biosynthetic process, and Carotenoid biosynthesis network (Paenibacillus ginsengihumi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000380965_00201	Unannotated protein. (322 aa)
	GCA_000380965_00476	Unannotated protein. (642 aa)
	GCA_000380965_00921	Unannotated protein. (464 aa)
	GCA_000380965_00923	Unannotated protein. (280 aa)
	GCA_000380965_00924	Unannotated protein. (309 aa)
	GCA_000380965_00925	Unannotated protein. (515 aa)
	GCA_000380965_00926	Unannotated protein. (332 aa)
	GCA_000380965_00931	Unannotated protein. (362 aa)
	GCA_000380965_00932	Unannotated protein. (313 aa)
	GCA_000380965_00933	Unannotated protein. (433 aa)
	GCA_000380965_01935	Unannotated protein. (463 aa)
	GCA_000380965_01969	Unannotated protein. (355 aa)
	GCA_000380965_01970	Unannotated protein. (204 aa)
	GCA_000380965_01971	Unannotated protein. (366 aa)
	GCA_000380965_01972	Unannotated protein. (271 aa)
	GCA_000380965_01973	Unannotated protein. (995 aa)
	GCA_000380965_02426	Unannotated protein. (250 aa)
	GCA_000380965_02710	Unannotated protein. (719 aa)
	GCA_000380965_02711	Unannotated protein. (1283 aa)
	GCA_000380965_02721	Unannotated protein. (194 aa)
	GCA_000380965_03120	Unannotated protein. (109 aa)
	GCA_000380965_03258	Unannotated protein. (698 aa)
	GCA_000380965_03275	Unannotated protein. (465 aa)
	GCA_000380965_03553	Unannotated protein. (224 aa)
	GCA_000380965_03656	Unannotated protein. (703 aa)
	GCA_000380965_03852	Unannotated protein. (248 aa)
	GCA_000380965_04001	Unannotated protein. (167 aa)
	GCA_000380965_04304	Unannotated protein. (404 aa)
	GCA_000380965_04553	Unannotated protein. (269 aa)
	GCA_000380965_04569	Unannotated protein. (426 aa)
	GCA_000380965_04576	Unannotated protein. (464 aa)
	GCA_000380965_04611	Unannotated protein. (155 aa)
	GCA_000380965_04813	Unannotated protein. (366 aa)
	GCA_000380965_05023	Unannotated protein. (279 aa)
	GCA_000380965_05024	Unannotated protein. (272 aa)

Your Current Organism:

Paenibacillus ginsengihumi

NCBI taxonomy Id: 1122919
Other names: P. ginsengihumi DSM 21568, Paenibacillus ginsengihumi DCY16, Paenibacillus ginsengihumi DSM 21568

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000380965_00201	GCA_000380965_00476	Unannotated protein.	Unannotated protein.	0.860
GCA_000380965_00201	GCA_000380965_00924	Unannotated protein.	Unannotated protein.	0.575
GCA_000380965_00201	GCA_000380965_00925	Unannotated protein.	Unannotated protein.	0.515
GCA_000380965_00201	GCA_000380965_00926	Unannotated protein.	Unannotated protein.	0.443
GCA_000380965_00201	GCA_000380965_00931	Unannotated protein.	Unannotated protein.	0.955
GCA_000380965_00201	GCA_000380965_00932	Unannotated protein.	Unannotated protein.	0.836
GCA_000380965_00201	GCA_000380965_02710	Unannotated protein.	Unannotated protein.	0.887
GCA_000380965_00201	GCA_000380965_02711	Unannotated protein.	Unannotated protein.	0.517
GCA_000380965_00201	GCA_000380965_03120	Unannotated protein.	Unannotated protein.	0.772
GCA_000380965_00201	GCA_000380965_03258	Unannotated protein.	Unannotated protein.	0.484
GCA_000380965_00201	GCA_000380965_03656	Unannotated protein.	Unannotated protein.	0.810
GCA_000380965_00201	GCA_000380965_03852	Unannotated protein.	Unannotated protein.	0.943
GCA_000380965_00201	GCA_000380965_04001	Unannotated protein.	Unannotated protein.	0.476
GCA_000380965_00201	GCA_000380965_04576	Unannotated protein.	Unannotated protein.	0.987
GCA_000380965_00201	GCA_000380965_04813	Unannotated protein.	Unannotated protein.	0.795
GCA_000380965_00201	GCA_000380965_05023	Unannotated protein.	Unannotated protein.	0.436
GCA_000380965_00476	GCA_000380965_00201	Unannotated protein.	Unannotated protein.	0.860
GCA_000380965_00476	GCA_000380965_00924	Unannotated protein.	Unannotated protein.	0.559
GCA_000380965_00476	GCA_000380965_00925	Unannotated protein.	Unannotated protein.	0.598
GCA_000380965_00476	GCA_000380965_00926	Unannotated protein.	Unannotated protein.	0.520