(58 nodes) Porphyrin and chlorophyll metabolism network (Paenibacillus ginsengihumi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000380965_03434	Unannotated protein. (189 aa)
	GCA_000380965_03474	Unannotated protein. (319 aa)
	GCA_000380965_03505	Unannotated protein. (390 aa)
	GCA_000380965_03521	Unannotated protein. (323 aa)
	GCA_000380965_03523	Unannotated protein. (455 aa)
	GCA_000380965_03558	Unannotated protein. (146 aa)
	GCA_000380965_03656	Unannotated protein. (703 aa)
	GCA_000380965_03697	Unannotated protein. (587 aa)
	GCA_000380965_03829	Unannotated protein. (313 aa)
	GCA_000380965_03852	Unannotated protein. (248 aa)
	GCA_000380965_04001	Unannotated protein. (167 aa)
	GCA_000380965_04141	Unannotated protein. (386 aa)
	GCA_000380965_04304	Unannotated protein. (404 aa)
	GCA_000380965_04443	Unannotated protein. (355 aa)
	GCA_000380965_04553	Unannotated protein. (269 aa)
	GCA_000380965_04576	Unannotated protein. (464 aa)
	GCA_000380965_04611	Unannotated protein. (155 aa)
	GCA_000380965_04813	Unannotated protein. (366 aa)
	GCA_000380965_05023	Unannotated protein. (279 aa)
	GCA_000380965_04702	Unannotated protein. (259 aa)
	GCA_000380965_00004	Unannotated protein. (525 aa)
	GCA_000380965_00047	Unannotated protein. (464 aa)
	GCA_000380965_00201	Unannotated protein. (322 aa)
	GCA_000380965_00909	Unannotated protein. (429 aa)
	GCA_000380965_00921	Unannotated protein. (464 aa)
	GCA_000380965_00923	Unannotated protein. (280 aa)
	GCA_000380965_00924	Unannotated protein. (309 aa)
	GCA_000380965_00925	Unannotated protein. (515 aa)
	GCA_000380965_00926	Unannotated protein. (332 aa)
	GCA_000380965_00931	Unannotated protein. (362 aa)
	GCA_000380965_00932	Unannotated protein. (313 aa)
	GCA_000380965_00933	Unannotated protein. (433 aa)
	GCA_000380965_00995	Unannotated protein. (509 aa)
	GCA_000380965_01360	Unannotated protein. (253 aa)
	GCA_000380965_01829	Unannotated protein. (111 aa)
	GCA_000380965_01911	Unannotated protein. (310 aa)
	GCA_000380965_01935	Unannotated protein. (463 aa)
	GCA_000380965_01969	Unannotated protein. (355 aa)
	GCA_000380965_01970	Unannotated protein. (204 aa)
	GCA_000380965_01971	Unannotated protein. (366 aa)
	GCA_000380965_01972	Unannotated protein. (271 aa)
	GCA_000380965_01973	Unannotated protein. (995 aa)
	GCA_000380965_02426	Unannotated protein. (250 aa)
	GCA_000380965_02495	Unannotated protein. (420 aa)
	GCA_000380965_02577	Unannotated protein. (615 aa)
	GCA_000380965_02580	Unannotated protein. (440 aa)
	GCA_000380965_02710	Unannotated protein. (719 aa)
	GCA_000380965_02711	Unannotated protein. (1283 aa)
	GCA_000380965_02715	Unannotated protein. (460 aa)
	GCA_000380965_02721	Unannotated protein. (194 aa)
	GCA_000380965_03003	Unannotated protein. (198 aa)
	GCA_000380965_03033	Unannotated protein. (250 aa)
	GCA_000380965_03120	Unannotated protein. (109 aa)
	GCA_000380965_03213	Unannotated protein. (109 aa)
	GCA_000380965_03258	Unannotated protein. (698 aa)
	GCA_000380965_03264	Unannotated protein. (327 aa)
	GCA_000380965_03275	Unannotated protein. (465 aa)
	GCA_000380965_03451	Unannotated protein. (598 aa)

Your Current Organism:

Paenibacillus ginsengihumi

NCBI taxonomy Id: 1122919
Other names: P. ginsengihumi DSM 21568, Paenibacillus ginsengihumi DCY16, Paenibacillus ginsengihumi DSM 21568

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000380965_00004	GCA_000380965_02711	Unannotated protein.	Unannotated protein.	0.459
GCA_000380965_00201	GCA_000380965_00924	Unannotated protein.	Unannotated protein.	0.575
GCA_000380965_00201	GCA_000380965_00925	Unannotated protein.	Unannotated protein.	0.515
GCA_000380965_00201	GCA_000380965_00926	Unannotated protein.	Unannotated protein.	0.443
GCA_000380965_00201	GCA_000380965_00931	Unannotated protein.	Unannotated protein.	0.955
GCA_000380965_00201	GCA_000380965_00932	Unannotated protein.	Unannotated protein.	0.836
GCA_000380965_00201	GCA_000380965_01911	Unannotated protein.	Unannotated protein.	0.811
GCA_000380965_00201	GCA_000380965_02580	Unannotated protein.	Unannotated protein.	0.418
GCA_000380965_00201	GCA_000380965_02710	Unannotated protein.	Unannotated protein.	0.887
GCA_000380965_00201	GCA_000380965_02711	Unannotated protein.	Unannotated protein.	0.517
GCA_000380965_00201	GCA_000380965_03120	Unannotated protein.	Unannotated protein.	0.772
GCA_000380965_00201	GCA_000380965_03258	Unannotated protein.	Unannotated protein.	0.484
GCA_000380965_00201	GCA_000380965_03558	Unannotated protein.	Unannotated protein.	0.402
GCA_000380965_00201	GCA_000380965_03656	Unannotated protein.	Unannotated protein.	0.810
GCA_000380965_00201	GCA_000380965_03829	Unannotated protein.	Unannotated protein.	0.590
GCA_000380965_00201	GCA_000380965_03852	Unannotated protein.	Unannotated protein.	0.943
GCA_000380965_00201	GCA_000380965_04001	Unannotated protein.	Unannotated protein.	0.476
GCA_000380965_00201	GCA_000380965_04141	Unannotated protein.	Unannotated protein.	0.451
GCA_000380965_00201	GCA_000380965_04576	Unannotated protein.	Unannotated protein.	0.987
GCA_000380965_00201	GCA_000380965_04813	Unannotated protein.	Unannotated protein.	0.795