(34 nodes) Lipopolysaccharide biosynthesis network (Pelobacter seleniigenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000711225_00399	Unannotated protein. (172 aa)
	GCA_000711225_04431	Unannotated protein. (604 aa)
	GCA_000711225_04392	Unannotated protein. (326 aa)
	GCA_000711225_04294	Unannotated protein. (257 aa)
	GCA_000711225_03820	Unannotated protein. (441 aa)
	GCA_000711225_03809	Unannotated protein. (299 aa)
	GCA_000711225_03662	Unannotated protein. (298 aa)
	GCA_000711225_03650	Unannotated protein. (356 aa)
	GCA_000711225_03649	Unannotated protein. (431 aa)
	GCA_000711225_03648	Unannotated protein. (221 aa)
	GCA_000711225_03646	Unannotated protein. (387 aa)
	GCA_000711225_03645	Unannotated protein. (257 aa)
	GCA_000711225_03643	Unannotated protein. (343 aa)
	GCA_000711225_03572	Unannotated protein. (355 aa)
	GCA_000711225_03229	Unannotated protein. (98 aa)
	GCA_000711225_03228	Unannotated protein. (536 aa)
	GCA_000711225_03116	Unannotated protein. (546 aa)
	GCA_000711225_02846	Unannotated protein. (540 aa)
	GCA_000711225_02776	Unannotated protein. (192 aa)
	GCA_000711225_02204	Unannotated protein. (184 aa)
	GCA_000711225_02181	Unannotated protein. (189 aa)
	GCA_000711225_02087	Unannotated protein. (553 aa)
	GCA_000711225_02086	Unannotated protein. (97 aa)
	GCA_000711225_02047	Unannotated protein. (195 aa)
	GCA_000711225_02040	Unannotated protein. (524 aa)
	GCA_000711225_01581	Unannotated protein. (360 aa)
	GCA_000711225_01513	Unannotated protein. (417 aa)
	GCA_000711225_00484	Unannotated protein. (309 aa)
	GCA_000711225_00483	Unannotated protein. (563 aa)
	GCA_000711225_00403	Unannotated protein. (254 aa)
	GCA_000711225_00401	Unannotated protein. (277 aa)
	GCA_000711225_00400	Unannotated protein. (325 aa)
	GCA_000711225_00330	Unannotated protein. (206 aa)
	GCA_000711225_00003	Unannotated protein. (468 aa)

Your Current Organism:

Pelobacter seleniigenes

NCBI taxonomy Id: 1122946
Other names: P. seleniigenes DSM 18267, Pelobacter seleniigenes DSM 18267

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000711225_00003	GCA_000711225_03649	Unannotated protein.	Unannotated protein.	0.615
GCA_000711225_00003	GCA_000711225_03650	Unannotated protein.	Unannotated protein.	0.503
GCA_000711225_00399	GCA_000711225_00400	Unannotated protein.	Unannotated protein.	0.999
GCA_000711225_00399	GCA_000711225_00401	Unannotated protein.	Unannotated protein.	0.999
GCA_000711225_00399	GCA_000711225_00403	Unannotated protein.	Unannotated protein.	0.994
GCA_000711225_00399	GCA_000711225_00484	Unannotated protein.	Unannotated protein.	0.622
GCA_000711225_00399	GCA_000711225_03643	Unannotated protein.	Unannotated protein.	0.586
GCA_000711225_00399	GCA_000711225_03645	Unannotated protein.	Unannotated protein.	0.598
GCA_000711225_00399	GCA_000711225_03646	Unannotated protein.	Unannotated protein.	0.599
GCA_000711225_00399	GCA_000711225_03649	Unannotated protein.	Unannotated protein.	0.810
GCA_000711225_00399	GCA_000711225_03650	Unannotated protein.	Unannotated protein.	0.682
GCA_000711225_00399	GCA_000711225_03662	Unannotated protein.	Unannotated protein.	0.455
GCA_000711225_00400	GCA_000711225_00399	Unannotated protein.	Unannotated protein.	0.999
GCA_000711225_00400	GCA_000711225_00401	Unannotated protein.	Unannotated protein.	0.997
GCA_000711225_00400	GCA_000711225_00403	Unannotated protein.	Unannotated protein.	0.939
GCA_000711225_00400	GCA_000711225_00484	Unannotated protein.	Unannotated protein.	0.881
GCA_000711225_00400	GCA_000711225_02776	Unannotated protein.	Unannotated protein.	0.582
GCA_000711225_00400	GCA_000711225_03643	Unannotated protein.	Unannotated protein.	0.885
GCA_000711225_00400	GCA_000711225_03645	Unannotated protein.	Unannotated protein.	0.880
GCA_000711225_00400	GCA_000711225_03646	Unannotated protein.	Unannotated protein.	0.881