(29 nodes) Phosphopantetheine binding network (Pseudonocardia spinosispora)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000429025_00892	Unannotated protein. (522 aa)
	GCA_000429025_01681	Unannotated protein. (3189 aa)
	GCA_000429025_01682	Unannotated protein. (1148 aa)
	GCA_000429025_01694	Unannotated protein. (436 aa)
	GCA_000429025_01699	Unannotated protein. (2147 aa)
	GCA_000429025_01700	Unannotated protein. (999 aa)
	GCA_000429025_04879	Unannotated protein. (2173 aa)
	GCA_000429025_04880	Unannotated protein. (1774 aa)
	GCA_000429025_04881	Unannotated protein. (1093 aa)
	GCA_000429025_05310	Unannotated protein. (3952 aa)
	GCA_000429025_05316	Unannotated protein. (3691 aa)
	GCA_000429025_05318	Unannotated protein. (6614 aa)
	GCA_000429025_05319	Unannotated protein. (6285 aa)
	GCA_000429025_05320	Unannotated protein. (3432 aa)
	GCA_000429025_05321	Unannotated protein. (6316 aa)
	GCA_000429025_05322	Unannotated protein. (4746 aa)
	GCA_000429025_05592	Unannotated protein. (1608 aa)
	GCA_000429025_05593	Unannotated protein. (2374 aa)
	GCA_000429025_05594	Unannotated protein. (2978 aa)
	GCA_000429025_06874	Unannotated protein. (1361 aa)
	GCA_000429025_06878	Unannotated protein. (1293 aa)
	GCA_000429025_06882	Unannotated protein. (1042 aa)
	GCA_000429025_06883	Unannotated protein. (420 aa)
	GCA_000429025_06895	Unannotated protein. (1416 aa)
	GCA_000429025_06897	Unannotated protein. (442 aa)
	GCA_000429025_07540	Unannotated protein. (2678 aa)
	GCA_000429025_08318	Unannotated protein. (549 aa)
	GCA_000429025_08319	Unannotated protein. (803 aa)
	GCA_000429025_08459	Unannotated protein. (2348 aa)

Your Current Organism:

Pseudonocardia spinosispora

NCBI taxonomy Id: 1123025
Other names: P. spinosispora DSM 44797, Pseudonocardia spinosispora DSM 44797

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000429025_00892	GCA_000429025_01681	Unannotated protein.	Unannotated protein.	0.993
GCA_000429025_00892	GCA_000429025_01682	Unannotated protein.	Unannotated protein.	0.996
GCA_000429025_00892	GCA_000429025_01694	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_01699	Unannotated protein.	Unannotated protein.	0.998
GCA_000429025_00892	GCA_000429025_01700	Unannotated protein.	Unannotated protein.	0.997
GCA_000429025_00892	GCA_000429025_04879	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_04880	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_04881	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_05310	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_05316	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_05318	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_05319	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_05320	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_05321	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_05322	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_05592	Unannotated protein.	Unannotated protein.	0.989
GCA_000429025_00892	GCA_000429025_05593	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_05594	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_06874	Unannotated protein.	Unannotated protein.	0.999
GCA_000429025_00892	GCA_000429025_06878	Unannotated protein.	Unannotated protein.	0.999