(57 nodes) Ribosome network (Rubritepida flocculans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000425365_03190	Unannotated protein. (125 aa)
	GCA_000425365_00123	Unannotated protein. (225 aa)
	GCA_000425365_00135	Unannotated protein. (41 aa)
	GCA_000425365_00403	Unannotated protein. (572 aa)
	GCA_000425365_00528	Unannotated protein. (66 aa)
	GCA_000425365_00747	Unannotated protein. (154 aa)
	GCA_000425365_00748	Unannotated protein. (92 aa)
	GCA_000425365_00750	Unannotated protein. (183 aa)
	GCA_000425365_01124	Unannotated protein. (213 aa)
	GCA_000425365_01215	Unannotated protein. (131 aa)
	GCA_000425365_01218	Unannotated protein. (111 aa)
	GCA_000425365_01243	Unannotated protein. (55 aa)
	GCA_000425365_01469	Unannotated protein. (164 aa)
	GCA_000425365_01470	Unannotated protein. (156 aa)
	GCA_000425365_01531	Unannotated protein. (90 aa)
	GCA_000425365_01967	Unannotated protein. (104 aa)
	GCA_000425365_01968	Unannotated protein. (89 aa)
	GCA_000425365_02083	Unannotated protein. (68 aa)
	GCA_000425365_02084	Unannotated protein. (120 aa)
	GCA_000425365_02142	Unannotated protein. (89 aa)
	GCA_000425365_02434	Unannotated protein. (130 aa)
	GCA_000425365_02435	Unannotated protein. (44 aa)
	GCA_000425365_02693	Unannotated protein. (97 aa)
	GCA_000425365_02876	Unannotated protein. (259 aa)
	GCA_000425365_03167	Unannotated protein. (102 aa)
	GCA_000425365_03168	Unannotated protein. (227 aa)
	GCA_000425365_03169	Unannotated protein. (206 aa)
	GCA_000425365_03170	Unannotated protein. (111 aa)
	GCA_000425365_03171	Unannotated protein. (278 aa)
	GCA_000425365_03172	Unannotated protein. (92 aa)
	GCA_000425365_03173	Unannotated protein. (134 aa)
	GCA_000425365_03174	Unannotated protein. (225 aa)
	GCA_000425365_03175	Unannotated protein. (139 aa)
	GCA_000425365_03176	Unannotated protein. (70 aa)
	GCA_000425365_03177	Unannotated protein. (87 aa)
	GCA_000425365_03178	Unannotated protein. (122 aa)
	GCA_000425365_03179	Unannotated protein. (106 aa)
	GCA_000425365_03180	Unannotated protein. (234 aa)
	GCA_000425365_03181	Unannotated protein. (101 aa)
	GCA_000425365_03182	Unannotated protein. (132 aa)
	GCA_000425365_03183	Unannotated protein. (177 aa)
	GCA_000425365_03184	Unannotated protein. (120 aa)
	GCA_000425365_03185	Unannotated protein. (208 aa)
	GCA_000425365_03186	Unannotated protein. (62 aa)
	GCA_000425365_03187	Unannotated protein. (160 aa)
	GCA_000425365_03191	Unannotated protein. (132 aa)
	GCA_000425365_03193	Unannotated protein. (140 aa)
	GCA_000425365_03196	Unannotated protein. (395 aa)
	GCA_000425365_03198	Unannotated protein. (299 aa)
	GCA_000425365_03550	Unannotated protein. (158 aa)
	GCA_000425365_03551	Unannotated protein. (123 aa)
	GCA_000425365_03554	Unannotated protein. (127 aa)
	GCA_000425365_03555	Unannotated protein. (171 aa)
	GCA_000425365_03556	Unannotated protein. (232 aa)
	GCA_000425365_03557	Unannotated protein. (144 aa)
	GCA_000425365_03604	Unannotated protein. (97 aa)
	GCA_000425365_03615	Unannotated protein. (67 aa)

Your Current Organism:

Rubritepida flocculans

NCBI taxonomy Id: 1123072
Other names: R. flocculans DSM 14296, Rubritepida flocculans DSM 14296

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000425365_00123	GCA_000425365_00135	Unannotated protein.	Unannotated protein.	0.991
GCA_000425365_00123	GCA_000425365_00403	Unannotated protein.	Unannotated protein.	0.974
GCA_000425365_00123	GCA_000425365_00528	Unannotated protein.	Unannotated protein.	0.994
GCA_000425365_00123	GCA_000425365_00747	Unannotated protein.	Unannotated protein.	0.998
GCA_000425365_00123	GCA_000425365_00748	Unannotated protein.	Unannotated protein.	0.994
GCA_000425365_00123	GCA_000425365_00750	Unannotated protein.	Unannotated protein.	0.996
GCA_000425365_00123	GCA_000425365_01124	Unannotated protein.	Unannotated protein.	0.996
GCA_000425365_00123	GCA_000425365_01215	Unannotated protein.	Unannotated protein.	0.995
GCA_000425365_00123	GCA_000425365_01218	Unannotated protein.	Unannotated protein.	0.993
GCA_000425365_00123	GCA_000425365_01243	Unannotated protein.	Unannotated protein.	0.991
GCA_000425365_00123	GCA_000425365_01469	Unannotated protein.	Unannotated protein.	0.998
GCA_000425365_00123	GCA_000425365_01470	Unannotated protein.	Unannotated protein.	0.998
GCA_000425365_00123	GCA_000425365_01531	Unannotated protein.	Unannotated protein.	0.994
GCA_000425365_00123	GCA_000425365_01967	Unannotated protein.	Unannotated protein.	0.996
GCA_000425365_00123	GCA_000425365_01968	Unannotated protein.	Unannotated protein.	0.995
GCA_000425365_00123	GCA_000425365_02083	Unannotated protein.	Unannotated protein.	0.992
GCA_000425365_00123	GCA_000425365_02084	Unannotated protein.	Unannotated protein.	0.991
GCA_000425365_00123	GCA_000425365_02142	Unannotated protein.	Unannotated protein.	0.998
GCA_000425365_00123	GCA_000425365_02434	Unannotated protein.	Unannotated protein.	0.603
GCA_000425365_00123	GCA_000425365_02435	Unannotated protein.	Unannotated protein.	0.986