STRINGSTRING
ZBT109_2073 ZBT109_2073 ZBT109_2066 ZBT109_2066 dapA dapA ubiC ubiC ZBT109_1768 ZBT109_1768 ZBT109_1769 ZBT109_1769 ZBT109_0498 ZBT109_0498 mutM mutM ZBT109_0509 ZBT109_0509 pyrF pyrF nth nth ZBT109_0982 ZBT109_0982 ZBT109_0984 ZBT109_0984 ilvD ilvD ZBT109_1042 ZBT109_1042 ZBT109_1049 ZBT109_1049 luxS luxS purK purK mltG mltG ZBT109_1976 ZBT109_1976 cysG cysG ZBT109_2020 ZBT109_2020 ispF ispF ZBT109_0283 ZBT109_0283 trpB trpB trpA trpA ZBT109_2288 ZBT109_2288 pdxT pdxT ZBT109_2284 ZBT109_2284 ZBT109_2278 ZBT109_2278 ribB ribB ZBT109_1248 ZBT109_1248 aroQ aroQ ZBT109_2693 ZBT109_2693 ZBT109_2727 ZBT109_2727 ZBT109_0075 ZBT109_0075 ZBT109_0107 ZBT109_0107 ZBT109_0130 ZBT109_0130 ilvA ilvA ZBT109_1326 ZBT109_1326 ZBT109_0535 ZBT109_0535 ZBT109_0549 ZBT109_0549 ZBT109_0555 ZBT109_0555 ZBT109_0556 ZBT109_0556 aroB aroB ZBT109_0790 ZBT109_0790 ZBT109_0792 ZBT109_0792 ZBT109_0818 ZBT109_0818 edd edd rlpA-2 rlpA-2 nnrD nnrD eno eno hisB hisB hisH hisH hisF hisF ZBT109_1561 ZBT109_1561 trpE trpE trpC trpC ZBT109_0704 ZBT109_0704 thiC thiC ppc ppc speD speD lysA lysA argH argH ZBT109_2436 ZBT109_2436 ZBT109_0759 ZBT109_0759 ubiD ubiD fabZ fabZ ZBT109_0715 ZBT109_0715 ZBT109_0929 ZBT109_0929 ZBT109_1072 ZBT109_1072 aroC aroC leuC leuC leuD leuD ZBT109_1126 ZBT109_1126 queE queE ZBT109_1640 ZBT109_1640 ZBT109_1639 ZBT109_1639 ZBT109_1634 ZBT109_1634 ZBT109_2416 ZBT109_2416 hemE hemE ZBT109_1356 ZBT109_1356 rlpA rlpA ZBT109_1439 ZBT109_1439 ZBT109_1471 ZBT109_1471 fabA fabA ZBT109_0348 ZBT109_0348 ZBT109_0353 ZBT109_0353 ZBT109_0368 ZBT109_0368 ZBT109_0393 ZBT109_0393 ZBT109_0460 ZBT109_0460 hemH hemH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ZBT109_2073Unannotated protein; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin. (123 aa)
ZBT109_2066Unannotated protein. (483 aa)
dapAUnannotated protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (291 aa)
ubiCUnannotated protein; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. (184 aa)
ZBT109_1768Unannotated protein. (179 aa)
ZBT109_1769Unannotated protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (177 aa)
ZBT109_0498Unannotated protein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (421 aa)
mutMUnannotated protein; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (271 aa)
ZBT109_0509Unannotated protein; Belongs to the group II decarboxylase family. (465 aa)
pyrFUnannotated protein; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. (235 aa)
nthUnannotated protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (215 aa)
ZBT109_0982Unannotated protein. (140 aa)
ZBT109_0984Unannotated protein. (718 aa)
ilvDUnannotated protein; Belongs to the IlvD/Edd family. (616 aa)
ZBT109_1042Unannotated protein. (345 aa)
ZBT109_1049Unannotated protein; Belongs to the aconitase/IPM isomerase family. (864 aa)
luxSUnannotated protein; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. (158 aa)
purKUnannotated protein; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR). (387 aa)
mltGUnannotated protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (358 aa)
ZBT109_1976Unannotated protein. (276 aa)
cysGUnannotated protein; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme. Belongs to the precorrin methyltransferase family. In the N-terminal section; belongs to the precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase family. (474 aa)
ZBT109_2020Unannotated protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (351 aa)
ispFUnannotated protein; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). (170 aa)
ZBT109_0283Unannotated protein. (87 aa)
trpBUnannotated protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. (423 aa)
trpAUnannotated protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. (268 aa)
ZBT109_2288Unannotated protein; Belongs to the PdxS/SNZ family. (303 aa)
pdxTUnannotated protein; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. (193 aa)
ZBT109_2284Unannotated protein. (99 aa)
ZBT109_2278Unannotated protein. (252 aa)
ribBUnannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. (380 aa)
ZBT109_1248Unannotated protein; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (506 aa)
aroQUnannotated protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. (144 aa)
ZBT109_2693Unannotated protein. (177 aa)
ZBT109_2727Unannotated protein. (473 aa)
ZBT109_0075Unannotated protein; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division. (387 aa)
ZBT109_0107Unannotated protein; Belongs to the alpha-acetolactate decarboxylase family. (260 aa)
ZBT109_0130Unannotated protein. (249 aa)
ilvAUnannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. (515 aa)
ZBT109_1326Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate. Belongs to the DHBP synthase family. (175 aa)
ZBT109_0535Unannotated protein; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (460 aa)
ZBT109_0549Unannotated protein. (124 aa)
ZBT109_0555Unannotated protein. (512 aa)
ZBT109_0556Unannotated protein; Belongs to the HpcH/HpaI aldolase family. (291 aa)
aroBUnannotated protein; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). (369 aa)
ZBT109_0790Unannotated protein; Belongs to the ALAD family. (324 aa)
ZBT109_0792Unannotated protein. (107 aa)
ZBT109_0818Unannotated protein. (220 aa)
eddUnannotated protein; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (614 aa)
rlpA-2Unannotated protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (218 aa)
nnrDUnannotated protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] (517 aa)
enoUnannotated protein; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. (431 aa)
hisBUnannotated protein. (202 aa)
hisHUnannotated protein; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (216 aa)
hisFUnannotated protein; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. (257 aa)
ZBT109_1561Unannotated protein; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the N-terminal section; belongs to the Fmt family. UDP- L-Ara4N formyltransferase subfamily. (659 aa)
trpEUnannotated protein; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia. (495 aa)
trpCUnannotated protein; Belongs to the TrpC family. (270 aa)
ZBT109_0704Unannotated protein. (318 aa)
thiCUnannotated protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. (641 aa)
ppcUnannotated protein; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (897 aa)
speDUnannotated protein; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 2 subfamily. (262 aa)
lysAUnannotated protein; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (424 aa)
argHUnannotated protein. (477 aa)
ZBT109_2436Unannotated protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III. (298 aa)
ZBT109_0759Unannotated protein. (146 aa)
ubiDUnannotated protein; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. (490 aa)
fabZUnannotated protein; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. (147 aa)
ZBT109_0715Unannotated protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (158 aa)
ZBT109_0929Unannotated protein. (370 aa)
ZBT109_1072Unannotated protein. (556 aa)
aroCUnannotated protein; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (363 aa)
leuCUnannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (481 aa)
leuDUnannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (211 aa)
ZBT109_1126Unannotated protein. (279 aa)
queEUnannotated protein; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. (214 aa)
ZBT109_1640Unannotated protein. (363 aa)
ZBT109_1639Unannotated protein. (381 aa)
ZBT109_1634Unannotated protein; Catalyzes the breakage of the C-P bond in alpha-D-ribose 1- methylphosphonate 5-phosphate (PRPn) forming alpha-D-ribose. Belongs to the PhnJ family. (301 aa)
ZBT109_2416Unannotated protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family. (242 aa)
hemEUnannotated protein; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III. (359 aa)
ZBT109_1356Unannotated protein; Belongs to the DapA family. (299 aa)
rlpAUnannotated protein; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (286 aa)
ZBT109_1439Unannotated protein; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (215 aa)
ZBT109_1471Unannotated protein; Belongs to the FPG family. (272 aa)
fabAUnannotated protein; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length. (172 aa)
ZBT109_0348Unannotated protein; Belongs to the DNA photolyase family. (473 aa)
ZBT109_0353Unannotated protein. (177 aa)
ZBT109_0368Unannotated protein. (166 aa)
ZBT109_0393Unannotated protein. (362 aa)
ZBT109_0460Unannotated protein. (473 aa)
hemHUnannotated protein; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (329 aa)
Your Current Organism:
Zymobacter palmae
NCBI taxonomy Id: 1123510
Other names: Z. palmae DSM 10491, Zymobacter palmae DSM 10491
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