(33 nodes) Mixed, incl. RAB geranylgeranylation, and HOPS complex network (Macrophomina phaseolina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MPH_12034	Rab-GAP TBC domain-containing protein. (1038 aa)
	MPH_11702	WW/Rsp5/WWP. (486 aa)
	MPH_13147	Ras GTPase. (219 aa)
	MPH_12315	Vacuolar fusion protein MON1. (621 aa)
	MPH_10388	Citron-like protein. (1210 aa)
	MPH_09886	Zinc finger FYVE-type protein. (486 aa)
	MPH_00976	Uncharacterized protein. (182 aa)
	MPH_09060	Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family. (529 aa)
	MPH_10808	Uncharacterized protein. (976 aa)
	MPH_08942	Ras GTPase. (327 aa)
	MPH_08800	Zinc finger FYVE-type protein. (560 aa)
	MPH_12729	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (467 aa)
	MPH_07295	Von Willebrand factor type A. (388 aa)
	MPH_06309	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology. (824 aa)
	MPH_07937	Pep3/Vps18/deep orange. (967 aa)
	MPH_05359	Ras GTPase. (276 aa)
	MPH_04978	Rab-GAP TBC domain-containing protein. (871 aa)
	MPH_08099	Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (337 aa)
	MPH_02110	Vacuolar sorting protein 9. (724 aa)
	MPH_01617	Rab-GAP TBC domain-containing protein. (857 aa)
	MPH_06017	Vacuolar sorting protein 9. (779 aa)
	MPH_03250	E3 ubiquitin-protein ligase PEP5. (974 aa)
	MPH_11480	Scytalone dehydratase. (188 aa)
	MPH_02648	Ras GTPase. (314 aa)
	MPH_09431	Ras GTPase. (152 aa)
	MPH_00868	Citron-like protein. (1015 aa)
	MPH_00279	Vps8 domain-containing protein. (1559 aa)
	MPH_01680	Protein prenyltransferase alpha subunit. (367 aa)
	MPH_07055	Ras GTPase. (205 aa)
	MPH_06602	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family. (912 aa)
	MPH_02397	Ras GTPase. (208 aa)
	MPH_00825	Uncharacterized protein. (341 aa)
	MPH_00389	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family. (582 aa)

Your Current Organism:

Macrophomina phaseolina

NCBI taxonomy Id: 1126212
Other names: M. phaseolina MS6, Macrophomina phaseolina MS6, Macrophomina phaseolina str. MS6, Macrophomina phaseolina strain MS6

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPH_00279	MPH_00389	K2SBS5	K2SZW7	Vps8 domain-containing protein.	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.	0.976
MPH_00279	MPH_00825	K2SBS5	K2SZ61	Vps8 domain-containing protein.	Uncharacterized protein.	0.489
MPH_00279	MPH_00868	K2SBS5	K2SAM6	Vps8 domain-containing protein.	Citron-like protein.	0.939
MPH_00279	MPH_00976	K2SBS5	K2RGJ9	Vps8 domain-containing protein.	Uncharacterized protein.	0.897
MPH_00279	MPH_02648	K2SBS5	K2S4W2	Vps8 domain-containing protein.	Ras GTPase.	0.840
MPH_00279	MPH_03250	K2SBS5	K2S2Y0	Vps8 domain-containing protein.	E3 ubiquitin-protein ligase PEP5.	0.989
MPH_00279	MPH_05359	K2SBS5	K2RRU0	Vps8 domain-containing protein.	Ras GTPase.	0.840
MPH_00279	MPH_06309	K2SBS5	K2RP86	Vps8 domain-containing protein.	Probable vacuolar protein sorting-associated protein 16 homolog; Essential for vacuolar protein sorting. Required for vacuole biogenesis, stability and to maintain vacuole morphology.	0.897
MPH_00279	MPH_06602	K2SBS5	K2SH43	Vps8 domain-containing protein.	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.	0.507
MPH_00279	MPH_07055	K2SBS5	K2SFN1	Vps8 domain-containing protein.	Ras GTPase.	0.477
MPH_00279	MPH_07937	K2SBS5	K2RQ27	Vps8 domain-containing protein.	Pep3/Vps18/deep orange.	0.989
MPH_00279	MPH_08800	K2SBS5	K2RHK2	Vps8 domain-containing protein.	Zinc finger FYVE-type protein.	0.536
MPH_00279	MPH_10388	K2SBS5	K2RDA3	Vps8 domain-containing protein.	Citron-like protein.	0.938
MPH_00279	MPH_10808	K2SBS5	K2RGV5	Vps8 domain-containing protein.	Uncharacterized protein.	0.671
MPH_00279	MPH_11480	K2SBS5	K2S444	Vps8 domain-containing protein.	Scytalone dehydratase.	0.897
MPH_00279	MPH_12315	K2SBS5	K2RC26	Vps8 domain-containing protein.	Vacuolar fusion protein MON1.	0.483
MPH_00279	MPH_13147	K2SBS5	K2RA92	Vps8 domain-containing protein.	Ras GTPase.	0.840
MPH_00389	MPH_00279	K2SZW7	K2SBS5	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.	Vps8 domain-containing protein.	0.976
MPH_00389	MPH_00825	K2SZW7	K2SZ61	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.	Uncharacterized protein.	0.971
MPH_00389	MPH_00868	K2SZW7	K2SAM6	Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.	Citron-like protein.	0.997