27 items (Macrophomina phaseolina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MPH_05068	Ribosomal protein S4/S9. (188 aa)
	MPH_13151	WD_REPEATS_REGION domain-containing protein. (930 aa)
	MPH_10257	Armadillo-like helical. (1796 aa)
	YTM1	Ribosome biogenesis protein YTM1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (493 aa)
	MPH_05994	RNA helicase. (631 aa)
	MPH_04943	Down-regulated-in-metastasis protein. (2593 aa)
	MPH_00435	CCAAT-binding factor. (548 aa)
	MPH_10055	Bud-site selection protein BUD22. (454 aa)
	MPH_07848	WD_REPEATS_REGION domain-containing protein. (887 aa)
	MPH_12183	U3 small nucleolar RNA-associated protein 22. (1191 aa)
	MPH_08567	HR1 repeat rho-binding protein. (1166 aa)
	MPH_05655	KRR1 interacting protein 1 subgroup. (632 aa)
	MPH_04210	Uncharacterized protein. (297 aa)
	MPH_03332	Uncharacterized protein. (336 aa)
	MPH_05205	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (256 aa)
	MPH_00594	Nop14-like protein. (843 aa)
	MPH_02514	Uncharacterized protein. (1051 aa)
	MPH_10668	RNA-processing protein HAT helix. (444 aa)
	MPH_03500	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (383 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (803 aa)
	MPH_00863	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (629 aa)
	MPH_02284	Anticodon-binding protein. (298 aa)
	MPH_00665	WD_REPEATS_REGION domain-containing protein. (1030 aa)
	MPH_00527	RNA 3'-terminal phosphate cyclase. (403 aa)
	MPH_04926	Uncharacterized protein. (627 aa)
	MPH_04287	Uncharacterized protein. (836 aa)
	MPH_03766	WD_REPEATS_REGION domain-containing protein. (891 aa)

Your Current Organism:

Macrophomina phaseolina

NCBI taxonomy Id: 1126212
Other names: M. phaseolina MS6, Macrophomina phaseolina MS6, Macrophomina phaseolina str. MS6, Macrophomina phaseolina strain MS6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	MPH_00435	K2S9Y9	K2RI41	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CCAAT-binding factor.	0.882
ERB1	MPH_00527	K2S9Y9	K2SI93	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA 3'-terminal phosphate cyclase.	0.728
ERB1	MPH_00594	K2S9Y9	K2S519	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nop14-like protein.	0.874
ERB1	MPH_00665	K2S9Y9	K2SI07	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.934
ERB1	MPH_00863	K2S9Y9	K2SAM2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.724
ERB1	MPH_02284	K2S9Y9	K2SD86	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Anticodon-binding protein.	0.864
ERB1	MPH_02514	K2S9Y9	K2S582	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.914
ERB1	MPH_03766	K2S9Y9	K2SQI5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.920
ERB1	MPH_04210	K2S9Y9	K2RUC9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.592
ERB1	MPH_04287	K2S9Y9	K2SNZ9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.904
ERB1	MPH_04926	K2S9Y9	K2SM70	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.951
ERB1	MPH_04943	K2S9Y9	K2R5X9	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Down-regulated-in-metastasis protein.	0.771
ERB1	MPH_05068	K2S9Y9	K2SLJ8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal protein S4/S9.	0.683
ERB1	MPH_05655	K2S9Y9	K2RQV1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	KRR1 interacting protein 1 subgroup.	0.661
ERB1	MPH_05994	K2S9Y9	K2R3A0	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA helicase.	0.985
ERB1	MPH_07848	K2S9Y9	K2RJX1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	WD_REPEATS_REGION domain-containing protein.	0.918
ERB1	MPH_08567	K2S9Y9	K2RN83	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	HR1 repeat rho-binding protein.	0.888
ERB1	MPH_10257	K2S9Y9	K2QRV2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Armadillo-like helical.	0.931
ERB1	MPH_10668	K2S9Y9	K2S645	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA-processing protein HAT helix.	0.859
ERB1	MPH_12183	K2S9Y9	K2RKM7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein 22.	0.872