(21 nodes) ClpP/crotonase-like domain superfamily network (Macrophomina phaseolina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MPH_12340	ATP-dependent Clp protease proteolytic subunit. (242 aa)
	MPH_10799	Crotonase core. (303 aa)
	MPH_13423	Crotonase core. (272 aa)
	MPH_12843	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (277 aa)
	MPH_06177	Carboxyl transferase. (1204 aa)
	MPH_06365	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (455 aa)
	MPH_09995	CoA carboxyltransferase C-terminal domain-containing protein. (590 aa)
	MPH_01848	Steadiness box. (251 aa)
	MPH_07647	Carboxyl transferase. (2273 aa)
	MPH_07120	Peptidase S41. (281 aa)
	MPH_11651	Peptidase S41. (800 aa)
	MPH_06175	Pyruvate carboxyltransferase domain-containing protein. (624 aa)
	MPH_06235	Peptidase S41. (774 aa)
	MPH_06660	Peptidase S41. (851 aa)
	MPH_07732	Carboxyl transferase. (597 aa)
	MPH_08298	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family. (294 aa)
	MPH_07128	Crotonase core. (267 aa)
	MPH_07485	Crotonase core. (272 aa)
	MPH_11050	AMP-dependent synthetase/ligase. (783 aa)
	MPH_01593	Crotonase core. (273 aa)
	MPH_02434	Crotonase core; Belongs to the enoyl-CoA hydratase/isomerase family. (291 aa)

Your Current Organism:

Macrophomina phaseolina

NCBI taxonomy Id: 1126212
Other names: M. phaseolina MS6, Macrophomina phaseolina MS6, Macrophomina phaseolina str. MS6, Macrophomina phaseolina strain MS6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPH_01593	MPH_01848	K2RF23	K2SEF1	Crotonase core.	Steadiness box.	0.807
MPH_01593	MPH_02434	K2RF23	K2RCQ7	Crotonase core.	Crotonase core; Belongs to the enoyl-CoA hydratase/isomerase family.	0.434
MPH_01593	MPH_06175	K2RF23	K2S283	Crotonase core.	Pyruvate carboxyltransferase domain-containing protein.	0.526
MPH_01593	MPH_06177	K2RF23	K2R2V5	Crotonase core.	Carboxyl transferase.	0.643
MPH_01593	MPH_06365	K2RF23	K2R2B7	Crotonase core.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.567
MPH_01593	MPH_07128	K2RF23	K2RLW6	Crotonase core.	Crotonase core.	0.431
MPH_01593	MPH_07647	K2RF23	K2SEA6	Crotonase core.	Carboxyl transferase.	0.674
MPH_01593	MPH_07732	K2RF23	K2RY09	Crotonase core.	Carboxyl transferase.	0.643
MPH_01593	MPH_08298	K2RF23	K2RW88	Crotonase core.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.832
MPH_01593	MPH_09995	K2RF23	K2QSS5	Crotonase core.	CoA carboxyltransferase C-terminal domain-containing protein.	0.643
MPH_01593	MPH_10799	K2RF23	K2RC13	Crotonase core.	Crotonase core.	0.623
MPH_01593	MPH_11050	K2RF23	K2RFE4	Crotonase core.	AMP-dependent synthetase/ligase.	0.543
MPH_01593	MPH_12843	K2RF23	K2R746	Crotonase core.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.425
MPH_01848	MPH_01593	K2SEF1	K2RF23	Steadiness box.	Crotonase core.	0.807
MPH_01848	MPH_07485	K2SEF1	K2RKU3	Steadiness box.	Crotonase core.	0.808
MPH_01848	MPH_13423	K2SEF1	K2R9J6	Steadiness box.	Crotonase core.	0.816
MPH_02434	MPH_01593	K2RCQ7	K2RF23	Crotonase core; Belongs to the enoyl-CoA hydratase/isomerase family.	Crotonase core.	0.434
MPH_02434	MPH_06175	K2RCQ7	K2S283	Crotonase core; Belongs to the enoyl-CoA hydratase/isomerase family.	Pyruvate carboxyltransferase domain-containing protein.	0.598
MPH_02434	MPH_06177	K2RCQ7	K2R2V5	Crotonase core; Belongs to the enoyl-CoA hydratase/isomerase family.	Carboxyl transferase.	0.817
MPH_02434	MPH_06365	K2RCQ7	K2R2B7	Crotonase core; Belongs to the enoyl-CoA hydratase/isomerase family.	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial; Hydrolyzes 3-hydroxyisobutyryl-CoA (HIBYL-CoA), a saline catabolite; Belongs to the enoyl-CoA hydratase/isomerase family.	0.926