(80 nodes) Phagosome network (Macrophomina phaseolina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MPH_11587	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (446 aa)
	MPH_10086	Ferric reductase transmembrane component 7. (254 aa)
	MPH_01970	Flavodoxin/nitric oxide synthase. (624 aa)
	MPH_12118	HR1 repeat rho-binding protein. (791 aa)
	MPH_02489	FAD-binding 8. (690 aa)
	MPH_10774	ATPase AAA+ type core. (4355 aa)
	MPH_12891	Uncharacterized protein. (379 aa)
	MPH_03470	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
	MPH_11458	Vacuolar protein sorting-associated protein 27; Component of the ESCRT-0 complex which is the sorting receptor for ubiquitinated cargo proteins at the multivesicular body (MVB) and recruits ESCRT-I to the MVB outer membrane. (718 aa)
	MPH_13147	Ras GTPase. (219 aa)
	MPH_11846	Coronin; Belongs to the WD repeat coronin family. (607 aa)
	MPH_13718	FAD-binding 8. (433 aa)
	MPH_12753	Uncharacterized protein. (114 aa)
	MPH_05392	Mannose-6-phosphate receptor binding protein. (344 aa)
	MPH_13880	FAD-binding 8. (467 aa)
	MPH_13957	FAD-binding 8. (546 aa)
	MPH_06009	Mitochondrial inner membrane translocase complex Tim8/9/10/13-zinc finger-like protein. (90 aa)
	MPH_06877	SecY protein. (476 aa)
	MPH_07691	Dynein 1 light intermediate chain. (535 aa)
	MPH_09643	V-type proton ATPase subunit a; Essential component of the vacuolar proton pump (V-ATPase), a multimeric enzyme that catalyzes the translocation of protons across the membranes. Required for assembly and activity of the V-ATPase. (857 aa)
	MPH_10054	Flavoprotein transmembrane component. (396 aa)
	MPH_10627	FAD-binding 8. (620 aa)
	MPH_11819	Phosphatidylinositol 3-kinase VPS34. (879 aa)
	MPH_12771	6-phosphogluconate dehydrogenase NADP-binding protein. (305 aa)
	MPH_06139	ATPase V1/A1 complex subunit D. (254 aa)
	MPH_05634	SNARE-complex protein Syntaxin-18. (275 aa)
	MPH_05381	FAD-binding 8. (603 aa)
	MPH_04527	FAD-binding 8. (552 aa)
	MPH_03591	Flavoprotein transmembrane component. (255 aa)
	MPH_03590	Cytochrome b245 heavy chain. (275 aa)
	MPH_03188	V-type proton ATPase subunit C; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit C is necessary for the assembly of the catalytic sector of the enzyme and is likely to have a specific function in its catalytic activity. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (392 aa)
	MPH_02977	Antibiotic biosynthesis monooxygenase. (280 aa)
	MPH_02102	Phox/Bem1p. (535 aa)
	MPH_01823	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (165 aa)
	MPH_00481	Flavoprotein transmembrane component. (670 aa)
	MPH_00718	WD_REPEATS_REGION domain-containing protein. (540 aa)
	MPH_01167	Basic helix-loop-helix Nulp1-type. (727 aa)
	MPH_07055	Ras GTPase. (205 aa)
	MPH_01798	Uncharacterized protein. (274 aa)
	MPH_07599	Uncharacterized protein. (1320 aa)
	MPH_08080	Mitochondrial import protein Pam17. (283 aa)
	MPH_02381	RNA helicase ATP-dependent DEAD-box conserved site; Belongs to the DEAD box helicase family. (363 aa)
	MPH_02598	Zinc finger FYVE/PHD-type protein. (288 aa)
	MPH_00259	Calreticulin/calnexin. (563 aa)
	MPH_08949	FAD-binding 8. (650 aa)
	MPH_00812	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum. (112 aa)
	MPH_09411	Uncharacterized protein. (826 aa)
	MPH_01587	Synaptobrevin; Belongs to the synaptobrevin family. (215 aa)
	MPH_01971	NOS domain-containing protein. (216 aa)
	MPH_01961	Uncharacterized protein. (579 aa)
	MPH_04754	FAD-binding 8. (759 aa)
	MPH_10427	V-type proton ATPase subunit; Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. The active enzyme consists of a catalytic V1 domain attached to an integral membrane V0 proton pore complex. This subunit is a non-integral membrane component of the membrane pore domain and is required for proper assembly of the V0 sector. Might be involved in the regulated assembly of V1 subunits onto the membrane sector or alternatively may prevent the passage of protons through V0 pores; Belongs to the V-ATPase V0D/AC39 subunit family. (365 aa)
	MPH_04699	6-phosphogluconate dehydrogenase NADP-binding protein. (332 aa)
	MPH_02648	Ras GTPase. (314 aa)
	MPH_11083	Ras GTPase. (199 aa)
	MPH_00712	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
	MPH_11877	PH domain-containing protein. (1481 aa)
	MPH_01622	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
	MPH_03757	Uncharacterized protein. (268 aa)
	MPH_12153	F-box domain cyclin-like protein. (603 aa)
	MPH_03811	Uncharacterized protein. (451 aa)
	MPH_12267	Cytochrome b245 heavy chain. (567 aa)
	MPH_04239	V-type proton ATPase subunit G; Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (115 aa)
	MPH_04717	FAD-binding 8. (834 aa)
	MPH_03014	Ferric reductase NAD binding protein. (235 aa)
	MPH_13693	FAD-binding 8. (251 aa)
	MPH_03543	V-type proton ATPase subunit H; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system. (483 aa)
	MPH_03758	ATP-synt_ab domain-containing protein. (424 aa)
	MPH_08981	FAD-binding FR-type domain-containing protein. (514 aa)
	MPH_04877	ATP-synt_ab domain-containing protein. (385 aa)
	MPH_05359	Ras GTPase. (276 aa)
	MPH_05493	FAD-binding 8. (600 aa)
	MPH_10968	FAD-binding 8. (608 aa)
	MPH_11660	Centromere protein Cenp-I. (744 aa)
	MPH_07315	Zinc finger FYVE-type protein. (2566 aa)
	MPH_09246	Antibiotic biosynthesis monooxygenase. (291 aa)
	MPH_09360	ATPase V0 complex proteolipid subunit C; Belongs to the V-ATPase proteolipid subunit family. (200 aa)
	MPH_07567	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. (161 aa)
	MPH_13376	FAD-binding 8. (412 aa)
	MPH_09144	ATPase V1/A1 complex subunit E. (221 aa)

Your Current Organism:

Macrophomina phaseolina

NCBI taxonomy Id: 1126212
Other names: M. phaseolina MS6, Macrophomina phaseolina MS6, Macrophomina phaseolina str. MS6, Macrophomina phaseolina strain MS6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPH_00259	MPH_00712	K2SBT9	K2S4A5	Calreticulin/calnexin.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.470
MPH_00259	MPH_00812	K2SBT9	K2SAH5	Calreticulin/calnexin.	Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.	0.558
MPH_00259	MPH_01622	K2SBT9	K2S2C5	Calreticulin/calnexin.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.470
MPH_00259	MPH_03470	K2SBT9	K2RAV1	Calreticulin/calnexin.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.649
MPH_00259	MPH_06877	K2SBT9	K2R119	Calreticulin/calnexin.	SecY protein.	0.647
MPH_00259	MPH_11587	K2SBT9	K2REI2	Calreticulin/calnexin.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.649
MPH_00259	MPH_11660	K2SBT9	K2RLZ2	Calreticulin/calnexin.	Centromere protein Cenp-I.	0.634
MPH_00481	MPH_02102	K2SI59	K2SVF8	Flavoprotein transmembrane component.	Phox/Bem1p.	0.586
MPH_00712	MPH_00259	K2S4A5	K2SBT9	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Calreticulin/calnexin.	0.470
MPH_00712	MPH_00718	K2S4A5	K2SH47	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	WD_REPEATS_REGION domain-containing protein.	0.981
MPH_00712	MPH_01622	K2S4A5	K2S2C5	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.873
MPH_00712	MPH_01798	K2S4A5	K2SES5	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.963
MPH_00712	MPH_03470	K2S4A5	K2RAV1	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.991
MPH_00712	MPH_04877	K2S4A5	K2RT45	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	ATP-synt_ab domain-containing protein.	0.652
MPH_00712	MPH_07055	K2S4A5	K2SFN1	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Ras GTPase.	0.873
MPH_00712	MPH_07691	K2S4A5	K2QYU4	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Dynein 1 light intermediate chain.	0.876
MPH_00712	MPH_10774	K2S4A5	K2RC55	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	ATPase AAA+ type core.	0.988
MPH_00712	MPH_11083	K2S4A5	K2S4H0	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Ras GTPase.	0.793
MPH_00712	MPH_11587	K2S4A5	K2REI2	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.991
MPH_00712	MPH_11660	K2S4A5	K2RLZ2	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Centromere protein Cenp-I.	0.979