(13 nodes) Mixed, incl. Invasion associated locus B (IalB) protein, and Protein-tyrosine phosphatase-like network (Bradyrhizobium sp. DOA9)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GAJ31921.1	Uncharacterized small protein. (90 aa)
	GAJ31928.1	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=6e-13. (279 aa)
	GAJ32333.1	Hypothetical protein. (272 aa)
	GAJ32438.1	Hypothetical protein. (101 aa)
	GAJ32460.1	Hypothetical protein. (209 aa)
	GAJ33565.1	Hypothetical protein. (174 aa)
	GAJ34120.1	Hypothetical protein. (178 aa)
	GAJ34121.1	Hypothetical protein. (169 aa)
	GAJ34598.1	Hypothetical protein. (389 aa)
	GAJ35400.1	Hypothetical protein. (250 aa)
	GAJ35455.1	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=5e-11. (253 aa)
	GAJ35508.1	Exopolysaccharide production negative regulator precursor; Q52926, evalue=6e-29. (275 aa)
	GAJ36195.1	Hypothetical protein. (357 aa)

Your Current Organism:

Bradyrhizobium sp. DOA9

NCBI taxonomy Id: 1126627
Other names: B. sp. DOA9

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAJ31921.1	GAJ31928.1	BDOA9_0111050	BDOA9_0111120	Uncharacterized small protein.	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=6e-13.	0.769
GAJ31921.1	GAJ32333.1	BDOA9_0111050	BDOA9_0115220	Uncharacterized small protein.	Hypothetical protein.	0.742
GAJ31921.1	GAJ32438.1	BDOA9_0111050	BDOA9_0116270	Uncharacterized small protein.	Hypothetical protein.	0.773
GAJ31921.1	GAJ32460.1	BDOA9_0111050	BDOA9_0116490	Uncharacterized small protein.	Hypothetical protein.	0.749
GAJ31921.1	GAJ33565.1	BDOA9_0111050	BDOA9_0127610	Uncharacterized small protein.	Hypothetical protein.	0.768
GAJ31921.1	GAJ34120.1	BDOA9_0111050	BDOA9_0133180	Uncharacterized small protein.	Hypothetical protein.	0.702
GAJ31921.1	GAJ34121.1	BDOA9_0111050	BDOA9_0133190	Uncharacterized small protein.	Hypothetical protein.	0.700
GAJ31921.1	GAJ34598.1	BDOA9_0111050	BDOA9_0137960	Uncharacterized small protein.	Hypothetical protein.	0.689
GAJ31921.1	GAJ35400.1	BDOA9_0111050	BDOA9_0146050	Uncharacterized small protein.	Hypothetical protein.	0.769
GAJ31921.1	GAJ35455.1	BDOA9_0111050	BDOA9_0146610	Uncharacterized small protein.	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=5e-11.	0.757
GAJ31921.1	GAJ35508.1	BDOA9_0111050	BDOA9_0147140	Uncharacterized small protein.	Exopolysaccharide production negative regulator precursor; Q52926, evalue=6e-29.	0.717
GAJ31921.1	GAJ36195.1	BDOA9_0111050	BDOA9_0154110	Uncharacterized small protein.	Hypothetical protein.	0.771
GAJ31928.1	GAJ31921.1	BDOA9_0111120	BDOA9_0111050	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=6e-13.	Uncharacterized small protein.	0.769
GAJ31928.1	GAJ32333.1	BDOA9_0111120	BDOA9_0115220	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=6e-13.	Hypothetical protein.	0.665
GAJ31928.1	GAJ32438.1	BDOA9_0111120	BDOA9_0116270	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=6e-13.	Hypothetical protein.	0.750
GAJ31928.1	GAJ32460.1	BDOA9_0111120	BDOA9_0116490	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=6e-13.	Hypothetical protein.	0.699
GAJ31928.1	GAJ33565.1	BDOA9_0111120	BDOA9_0127610	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=6e-13.	Hypothetical protein.	0.718
GAJ31928.1	GAJ34120.1	BDOA9_0111120	BDOA9_0133180	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=6e-13.	Hypothetical protein.	0.613
GAJ31928.1	GAJ34121.1	BDOA9_0111120	BDOA9_0133190	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=6e-13.	Hypothetical protein.	0.629
GAJ31928.1	GAJ34598.1	BDOA9_0111120	BDOA9_0137960	31 kDa outer-membrane immunogenic protein precursor; Q45322, evalue=6e-13.	Hypothetical protein.	0.629