(12 nodes) Homoserine metabolic process, and Homoserine dehydrogenase network (Paenibacillus beijingensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJY74379.1	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	AJY77568.1	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	AJY74962.1	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family. (313 aa)
	AJY75065.1	Aminotransferase class I and II; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	metAA	Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family. (305 aa)
	AJY75820.1	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	AJY75821.1	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	AJY75927.1	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	AJY76075.1	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
	AJY76260.1	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
	AJY76798.1	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AJY76899.1	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)

Your Current Organism:

Paenibacillus beijingensis

NCBI taxonomy Id: 1126833
Other names: ACCC 03082, DSM 24997, P. beijingensis, Paenibacillus sp. 7188, strain 7188

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJY74379.1	AJY75065.1	VN24_07055	VN24_11350	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase class I and II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AJY74379.1	AJY75820.1	VN24_07055	VN24_16245	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
AJY74379.1	AJY75821.1	VN24_07055	VN24_16250	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
AJY74379.1	AJY75927.1	VN24_07055	VN24_16930	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
AJY74379.1	AJY76075.1	VN24_07055	VN24_17805	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJY74379.1	AJY76260.1	VN24_07055	VN24_18955	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
AJY74379.1	AJY76798.1	VN24_07055	VN24_22310	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.882
AJY74379.1	AJY76899.1	VN24_07055	VN24_22970	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
AJY74379.1	AJY77568.1	VN24_07055	VN24_07060	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AJY74379.1	metAA	VN24_07055	VN24_16240	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.	0.938
AJY74962.1	AJY75065.1	VN24_10620	VN24_11350	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Aminotransferase class I and II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
AJY74962.1	AJY75820.1	VN24_10620	VN24_16245	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJY74962.1	AJY75821.1	VN24_10620	VN24_16250	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJY74962.1	AJY75927.1	VN24_10620	VN24_16930	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
AJY74962.1	AJY76260.1	VN24_10620	VN24_18955	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	O-acetylhomoserine aminocarboxypropyltransferase; Catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
AJY74962.1	AJY76798.1	VN24_10620	VN24_22310	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJY74962.1	AJY76899.1	VN24_10620	VN24_22970	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJY74962.1	AJY77568.1	VN24_10620	VN24_07060	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Catalyzes the formation of cystathionine from L-cysteine and O-succinyl-L-homoserine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
AJY75065.1	AJY74379.1	VN24_11350	VN24_07055	Aminotransferase class I and II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Homoserine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AJY75065.1	AJY74962.1	VN24_11350	VN24_10620	Aminotransferase class I and II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.917