(6 nodes) Glutathione metabolism network (Paenibacillus beijingensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pepA	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. (504 aa)
	AJY74234.1	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family. (181 aa)
	AJY74613.1	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family. (169 aa)
	AJY75146.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
	AJY75591.1	Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	pepA-2	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. (513 aa)

Your Current Organism:

Paenibacillus beijingensis

NCBI taxonomy Id: 1126833
Other names: ACCC 03082, DSM 24997, P. beijingensis, Paenibacillus sp. 7188, strain 7188

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJY74234.1	AJY74613.1	VN24_06145	VN24_08520	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	0.903
AJY74234.1	AJY75146.1	VN24_06145	VN24_11840	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AJY74234.1	AJY75591.1	VN24_06145	VN24_14790	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AJY74613.1	AJY74234.1	VN24_08520	VN24_06145	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	0.903
AJY74613.1	AJY75146.1	VN24_08520	VN24_11840	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AJY74613.1	AJY75591.1	VN24_08520	VN24_14790	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
AJY75146.1	AJY74234.1	VN24_11840	VN24_06145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	0.913
AJY75146.1	AJY74613.1	VN24_11840	VN24_08520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	0.913
AJY75146.1	AJY75591.1	VN24_11840	VN24_14790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AJY75146.1	pepA	VN24_11840	VN24_02350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.923
AJY75146.1	pepA-2	VN24_11840	VN24_22265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.923
AJY75591.1	AJY74234.1	VN24_14790	VN24_06145	Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	0.913
AJY75591.1	AJY74613.1	VN24_14790	VN24_08520	Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutathione peroxidase family.	0.913
AJY75591.1	AJY75146.1	VN24_14790	VN24_11840	Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
AJY75591.1	pepA	VN24_14790	VN24_02350	Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.925
AJY75591.1	pepA-2	VN24_14790	VN24_22265	Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.925
pepA	AJY75146.1	VN24_02350	VN24_11840	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
pepA	AJY75591.1	VN24_02350	VN24_14790	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	Gamma-glutamyltranspeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
pepA	pepA-2	VN24_02350	VN24_22265	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.903
pepA-2	AJY75146.1	VN24_22265	VN24_11840	Peptidase M17; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923