(10 nodes) Agmatinase-related, and Putrescine metabolic process network (Paenibacillus beijingensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJY73802.1	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (419 aa)
	AJY77479.1	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (306 aa)
	AJY73896.1	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (323 aa)
	AJY77520.1	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (315 aa)
	AJY74901.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)
	AJY74993.1	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. (290 aa)
	AJY75620.1	Hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	AJY76411.1	Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (489 aa)
	AJY76773.1	Putrescine--2-oxoglutarate aminotransferase; Catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (462 aa)
	AJY76789.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (445 aa)

Your Current Organism:

Paenibacillus beijingensis

NCBI taxonomy Id: 1126833
Other names: ACCC 03082, DSM 24997, P. beijingensis, Paenibacillus sp. 7188, strain 7188

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJY73802.1	AJY73896.1	VN24_03105	VN24_03810	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.927
AJY73802.1	AJY74993.1	VN24_03105	VN24_10870	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.927
AJY73802.1	AJY75620.1	VN24_03105	VN24_14970	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AJY73802.1	AJY76773.1	VN24_03105	VN24_22145	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Putrescine--2-oxoglutarate aminotransferase; Catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.920
AJY73802.1	AJY76789.1	VN24_03105	VN24_22245	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.926
AJY73802.1	AJY77479.1	VN24_03105	VN24_03800	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.927
AJY73802.1	AJY77520.1	VN24_03105	VN24_05145	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.927
AJY73896.1	AJY73802.1	VN24_03810	VN24_03105	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.927
AJY73896.1	AJY74901.1	VN24_03810	VN24_10270	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
AJY73896.1	AJY75620.1	VN24_03810	VN24_14970	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
AJY73896.1	AJY76411.1	VN24_03810	VN24_19865	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AJY73896.1	AJY76773.1	VN24_03810	VN24_22145	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Putrescine--2-oxoglutarate aminotransferase; Catalyzes the formation of 4-aminobutyraldehyde from putrescine and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.902
AJY73896.1	AJY76789.1	VN24_03810	VN24_22245	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.902
AJY73896.1	AJY77479.1	VN24_03810	VN24_03800	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.603
AJY74901.1	AJY73896.1	VN24_10270	VN24_03810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.921
AJY74901.1	AJY74993.1	VN24_10270	VN24_10870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.931
AJY74901.1	AJY76411.1	VN24_10270	VN24_19865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AJY74901.1	AJY77479.1	VN24_10270	VN24_03800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.920
AJY74901.1	AJY77520.1	VN24_10270	VN24_05145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	0.920
AJY74993.1	AJY73802.1	VN24_10870	VN24_03105	Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.	Ornithine--oxo-acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.927