STRINGSTRING
dnaA dnaA AFS77106.1 AFS77106.1 AFS77139.1 AFS77139.1 agrB1 agrB1 agrD agrD AFS77188.1 AFS77188.1 AFS77222.1 AFS77222.1 AFS77256.1 AFS77256.1 ywlE ywlE wecB wecB phoB phoB AFS77312.1 AFS77312.1 flgM flgM csrA csrA AFS77327.1 AFS77327.1 mcp1 mcp1 mcp2 mcp2 mcp3 mcp3 mcp4 mcp4 AFS77441.1 AFS77441.1 mcp5 mcp5 AFS77579.1 AFS77579.1 vanW vanW vanG vanG vanXY vanXY vanT vanT AFS77591.1 AFS77591.1 AFS77601.1 AFS77601.1 AFS77610.1 AFS77610.1 AFS77611.1 AFS77611.1 AFS77679.1 AFS77679.1 AFS77737.1 AFS77737.1 AFS77741.1 AFS77741.1 AFS77742.1 AFS77742.1 AFS77743.1 AFS77743.1 AFS77799.1 AFS77799.1 mcp6 mcp6 AFS77818.1 AFS77818.1 agrA agrA AFS77859.1 AFS77859.1 AFS77861.1 AFS77861.1 cheA1 cheA1 cheW1 cheW1 AFS77914.1 AFS77914.1 cheR1 cheR1 cheB1 cheB1 AFS77999.1 AFS77999.1 AFS78220.1 AFS78220.1 pstS1 pstS1 phoP1 phoP1 phoR1 phoR1 spo0A spo0A agrB2 agrB2 cheR2 cheR2 fliA fliA cheW2 cheW2 cheA2 cheA2 cheY cheY AFS78601.1 AFS78601.1 pstS2 pstS2 AFS78774.1 AFS78774.1 AFS78788.1 AFS78788.1 cheV cheV AFS78898.1 AFS78898.1 AFS78899.1 AFS78899.1 AFS78900.1 AFS78900.1 lytT lytT vanS vanS vanR vanR mcp7 mcp7 mcp8 mcp8 glnA glnA AFS79091.1 AFS79091.1 AFS79148.1 AFS79148.1 mcp10 mcp10 mcp12 mcp12 AFS79295.1 AFS79295.1 srrB srrB AFS79430.1 AFS79430.1 AFS79432.1 AFS79432.1 ssrB ssrB AFS79525.1 AFS79525.1 cheB2 cheB2 AFS79571.1 AFS79571.1 mcp13 mcp13 arlS arlS arlR arlR mcp14 mcp14 AFS79697.1 AFS79697.1 AFS79719.1 AFS79719.1 mcp15 mcp15 mcpC mcpC htrA htrA AFS79826.1 AFS79826.1 AFS79827.1 AFS79827.1 AFS79859.1 AFS79859.1 AFS79886.1 AFS79886.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (444 aa)
AFS77106.1Putative signal transduction GGDEF domain-containing protein. (296 aa)
AFS77139.1Putative lantibiotic ABC transporter ATP-binding protein. (596 aa)
agrB1Accessory gene regulator protein B. (194 aa)
agrDAutoinducer prepeptide. (48 aa)
AFS77188.1NAD-dependent malic enzyme. (387 aa)
AFS77222.1Methyl-accepting chemotaxis protein. (516 aa)
AFS77256.1Response regulator receiver protein, CheY-like protein. (127 aa)
ywlELow molecular weight protein-tyrosine-phosphatase YwlE. (137 aa)
wecBUDP-N-acetylglucosamine 2-epimerase WecB; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (374 aa)
phoBAlkaline phosphatase III; Belongs to the alkaline phosphatase family. (508 aa)
AFS77312.1Putative AgrB-like protein. (188 aa)
flgMNegative regulator of flagellin synthesis, anti-sigma-28 factor FlgM. (96 aa)
csrACarbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (109 aa)
AFS77327.1Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (568 aa)
mcp1Methyl-accepting chemotaxis sensory transducer with Cache sensor Mcp. (666 aa)
mcp2Methyl-accepting chemotaxis sensory transducer with Cache sensor Mcp. (666 aa)
mcp3Methyl-accepting chemotaxis protein Mcp. (659 aa)
mcp4Methyl-accepting chemotaxis protein Mcp. (678 aa)
AFS77441.1Cyclic nucleotide-binding protein. (203 aa)
mcp5Methyl-accepting chemotaxis protein Mcp. (620 aa)
AFS77579.1Putative vancomycin response regulator. (231 aa)
vanWVancomycin B/G-type resistance protein VanW. (286 aa)
vanGD-alanine-D-serine ligase VanG; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (348 aa)
vanXYD-alanyl-D-alanine carboxypeptidase VanXY. (249 aa)
vanTSerine-type alanine/serine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (709 aa)
AFS77591.1Diguanylate cyclase (GGDEF) domain-containing protein. (285 aa)
AFS77601.1Two-component system signal transduction response regulator. (238 aa)
AFS77610.1Signal transduction histidine kinase. (433 aa)
AFS77611.1Signal transduction response regulator. (279 aa)
AFS77679.1Serine protease, trypsin-like protein. (374 aa)
AFS77737.1Transcriptional regulator, LytTR family. (259 aa)
AFS77741.1Transcriptional regulator, LytTR family. (236 aa)
AFS77742.1Sensor signal transduction histidine kinase. (338 aa)
AFS77743.1AgrB-like protein. (192 aa)
AFS77799.1Putative type IV pilin. (132 aa)
mcp6Methyl-accepting chemotaxis protein Mcp. (691 aa)
AFS77818.1Methyl-accepting chemotaxis sensory transducer. (667 aa)
agrAAccessory gene regulator protein A. (242 aa)
AFS77859.1Sensor histidine kinase-like protein. (416 aa)
AFS77861.1Putative agrB-like protein; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family. (236 aa)
cheA1Chemotaxis protein CheA. (654 aa)
cheW1Chemotaxis protein CheW. (152 aa)
AFS77914.1Methyl-accepting chemotaxis sensory transducer. (559 aa)
cheR1Chemotaxis protein methyltransferase CheR. (271 aa)
cheB1Chemotaxis-specific methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (338 aa)
AFS77999.1Chemotaxis protein, CheW-like protein. (151 aa)
AFS78220.1Two-component response regulator. (230 aa)
pstS1Phosphate-binding protein PstS. (302 aa)
phoP1Alkaline phosphatase synthesis transcriptional regulatory protein PhoP. (232 aa)
phoR1Alkaline phosphatase synthesis sensor protein PhoR. (473 aa)
spo0AStage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process. (268 aa)
agrB2Accessory gene regulator B. (196 aa)
cheR2Chemotaxis protein methyltransferase CheR. (260 aa)
fliARNA polymerase sigma factor for flagellar operon; Belongs to the sigma-70 factor family. (247 aa)
cheW2Chemotaxis protein CheW. (154 aa)
cheA2Chemotaxis protein CheA. (672 aa)
cheYChemotaxis and motility response regulator. (120 aa)
AFS78601.1MotA/TolQ/ExbB proton channel family protein. (262 aa)
pstS2ABC transporter phosphate-binding protein PstS. (309 aa)
AFS78774.1VanW family protein. (309 aa)
AFS78788.1Methyl-accepting chemotaxis sensory transducer with Cache sensor. (681 aa)
cheVChemotaxis protein CheV. (292 aa)
AFS78898.1ABC transporter permease protein. (630 aa)
AFS78899.1ABC transporter ATP-binding protein. (257 aa)
AFS78900.1Sensor signal transduction histidine kinase. (282 aa)
lytTSensory transduction protein LytT. (236 aa)
vanSVancomycin sensor histidine kinase VanS. (378 aa)
vanRVancomycin response regulator VanR. (232 aa)
mcp7Methyl-accepting chemotaxis protein Mcp. (565 aa)
mcp8Methyl-accepting chemotaxis protein Mcp. (565 aa)
glnAGlutamate--ammonia ligase GlnA. (450 aa)
AFS79091.1Alkaline phosphatase; Belongs to the alkaline phosphatase family. (498 aa)
AFS79148.1Signal transduction response regulator. (235 aa)
mcp10Methyl-accepting chemotaxis protein Mcp. (569 aa)
mcp12Methyl-accepting chemotaxis protein Mcp. (676 aa)
AFS79295.1Two-component sensor histidine kinase. (485 aa)
srrBSensor protein SrrB. (482 aa)
AFS79430.1Methyl-accepting chemotaxis sensory transducer. (563 aa)
AFS79432.1Methyl-accepting chemotaxis sensory transducer. (663 aa)
ssrBSensor signal transduction histidine kinase SsrB. (503 aa)
AFS79525.1Methyl-accepting chemotaxis sensory transducer. (322 aa)
cheB2Chemotaxis response regulator protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (351 aa)
AFS79571.1Putative transcriptional regulator. (229 aa)
mcp13Methyl-accepting chemotaxis protein Mcp. (589 aa)
arlSSignal transduction histidine-protein kinase ArlS. (514 aa)
arlRTwo-component signal transduction response regulator. (229 aa)
mcp14Methyl-accepting chemotaxis protein Mcp. (690 aa)
AFS79697.1Two component transcriptional regulator, winged helix family. (224 aa)
AFS79719.1Signal transduction histidine kinase. (459 aa)
mcp15Methyl-accepting chemotaxis protein Mcp. (569 aa)
mcpCMethyl-accepting chemotaxis protein McpC. (533 aa)
htrASerine protease HtrA. (407 aa)
AFS79826.1Sensor signal transduction histidine kinase. (598 aa)
AFS79827.1Two component transcriptional regulator. (229 aa)
AFS79859.1Putative signal transduction GGDEF domain-containing protein. (557 aa)
AFS79886.1Putative methyl-accepting chemotaxis sensory transducer. (667 aa)
Your Current Organism:
Gottschalkia acidurici
NCBI taxonomy Id: 1128398
Other names: Clostridium acidurici 9a, G. acidurici 9a, Gottschalkia acidurici 9a
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