19 items (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Z043_109809	Hypoxia-inducible factor 3a-like. (588 aa)
	LOC108932430	Egl nine2-like. (508 aa)
	hif1a	Hypoxia-inducible factor 1 alpha subunit-like. (762 aa)
	LOC108942035	PAS domain-containing protein. (779 aa)
	LOC108941156	Aryl hydrocarbon receptor nuclear translocator 2-like. (713 aa)
	LOC108934068	Hypoxia-inducible factor 1-alpha-like isoform X1. (701 aa)
	LOC108925152	Aryl hydrocarbon receptor nuclear translocator-like. (782 aa)
	NPAS3	PAS domain-containing protein. (959 aa)
	LOC108929261	Single-minded1-like. (728 aa)
	sim1	PAS domain-containing protein. (725 aa)
	Z043_123698	Egl nine1-like. (124 aa)
	egln1	Uncharacterized protein. (421 aa)
	Epas1	Ig-like domain-containing protein. (942 aa)
	SIM2	Single-minded2-like. (729 aa)
	npas4	Neuronal PAS domain-containing protein 4-like. (934 aa)
	Z043_122809	Neuronal PAS domain-containing protein 1-like. (765 aa)
	hif1an	Hypoxia-inducible factor 1-alpha inhibitor-like. (355 aa)
	egln3	Hypoxia-inducible factor prolyl hydroxylase. (324 aa)
	LOC108933731	Fe2OG dioxygenase domain-containing protein. (398 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Epas1	LOC108925152	ENSSFOP00015064151	ENSSFOP00015034783	Ig-like domain-containing protein.	Aryl hydrocarbon receptor nuclear translocator-like.	0.848
Epas1	LOC108932430	ENSSFOP00015064151	ENSSFOP00015011263	Ig-like domain-containing protein.	Egl nine2-like.	0.801
Epas1	LOC108933731	ENSSFOP00015064151	ENSSFOP00015078603	Ig-like domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.801
Epas1	LOC108941156	ENSSFOP00015064151	ENSSFOP00015025937	Ig-like domain-containing protein.	Aryl hydrocarbon receptor nuclear translocator 2-like.	0.848
Epas1	LOC108942035	ENSSFOP00015064151	ENSSFOP00015025279	Ig-like domain-containing protein.	PAS domain-containing protein.	0.848
Epas1	Z043_123698	ENSSFOP00015064151	ENSSFOP00015061007	Ig-like domain-containing protein.	Egl nine1-like.	0.801
Epas1	egln1	ENSSFOP00015064151	ENSSFOP00015061345	Ig-like domain-containing protein.	Uncharacterized protein.	0.801
Epas1	egln3	ENSSFOP00015064151	ENSSFOP00015077927	Ig-like domain-containing protein.	Hypoxia-inducible factor prolyl hydroxylase.	0.801
Epas1	hif1an	ENSSFOP00015064151	ENSSFOP00015077792	Ig-like domain-containing protein.	Hypoxia-inducible factor 1-alpha inhibitor-like.	0.878
LOC108925152	Epas1	ENSSFOP00015034783	ENSSFOP00015064151	Aryl hydrocarbon receptor nuclear translocator-like.	Ig-like domain-containing protein.	0.848
LOC108925152	LOC108929261	ENSSFOP00015034783	ENSSFOP00015046651	Aryl hydrocarbon receptor nuclear translocator-like.	Single-minded1-like.	0.688
LOC108925152	LOC108934068	ENSSFOP00015034783	ENSSFOP00015032733	Aryl hydrocarbon receptor nuclear translocator-like.	Hypoxia-inducible factor 1-alpha-like isoform X1.	0.614
LOC108925152	NPAS3	ENSSFOP00015034783	ENSSFOP00015045774	Aryl hydrocarbon receptor nuclear translocator-like.	PAS domain-containing protein.	0.804
LOC108925152	SIM2	ENSSFOP00015034783	ENSSFOP00015066776	Aryl hydrocarbon receptor nuclear translocator-like.	Single-minded2-like.	0.688
LOC108925152	Z043_109809	ENSSFOP00015034783	ENSSFOP00015010019	Aryl hydrocarbon receptor nuclear translocator-like.	Hypoxia-inducible factor 3a-like.	0.848
LOC108925152	Z043_122809	ENSSFOP00015034783	ENSSFOP00015073224	Aryl hydrocarbon receptor nuclear translocator-like.	Neuronal PAS domain-containing protein 1-like.	0.804
LOC108925152	hif1a	ENSSFOP00015034783	ENSSFOP00015020566	Aryl hydrocarbon receptor nuclear translocator-like.	Hypoxia-inducible factor 1 alpha subunit-like.	0.848
LOC108925152	npas4	ENSSFOP00015034783	ENSSFOP00015066917	Aryl hydrocarbon receptor nuclear translocator-like.	Neuronal PAS domain-containing protein 4-like.	0.840
LOC108925152	sim1	ENSSFOP00015034783	ENSSFOP00015055704	Aryl hydrocarbon receptor nuclear translocator-like.	PAS domain-containing protein.	0.688
LOC108929261	LOC108925152	ENSSFOP00015046651	ENSSFOP00015034783	Single-minded1-like.	Aryl hydrocarbon receptor nuclear translocator-like.	0.688