(15 nodes) Mixed, incl. Phospholipase B, and Ribonuclease T2-like network (Scleropages formosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSFOP00015004851	annotation not available (463 aa)
	LOC108937862	Lysophosphatidic acid phosphatase type 6-like; Belongs to the histidine acid phosphatase family. (399 aa)
	ENSSFOP00015018177	annotation not available (579 aa)
	plbd1	Phospholipase B-like; Putative phospholipase. (540 aa)
	Acp6	Lysophosphatidic acid phosphatase type 6-like; Belongs to the histidine acid phosphatase family. (416 aa)
	arl6ip6	ADP-ribosylation factor-like protein 6-interacting protein 6-like. (188 aa)
	LOC108932702	Uncharacterized protein; Belongs to the RNase T2 family. (246 aa)
	ssx2ip	Uncharacterized protein. (595 aa)
	ENSSFOP00015027836	annotation not available (116 aa)
	LOC108922261	Raftlin-2-like. (424 aa)
	plbd2	Phospholipase B-like; Putative phospholipase. (556 aa)
	ENSSFOP00015045332	Beta-microseminoprotein-like. (118 aa)
	LOC108918830	Raftlin-2-like. (435 aa)
	Z043_115912	Uncharacterized protein; Belongs to the RNase T2 family. (176 aa)
	LOC108939894	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. (563 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108918830	arl6ip6	ENSSFOP00015056995	ENSSFOP00015021086	Raftlin-2-like.	ADP-ribosylation factor-like protein 6-interacting protein 6-like.	0.441
LOC108922261	arl6ip6	ENSSFOP00015036712	ENSSFOP00015021086	Raftlin-2-like.	ADP-ribosylation factor-like protein 6-interacting protein 6-like.	0.441
LOC108932702	ssx2ip	ENSSFOP00015022297	ENSSFOP00015024442	Uncharacterized protein; Belongs to the RNase T2 family.	Uncharacterized protein.	0.525
arl6ip6	LOC108918830	ENSSFOP00015021086	ENSSFOP00015056995	ADP-ribosylation factor-like protein 6-interacting protein 6-like.	Raftlin-2-like.	0.441
arl6ip6	LOC108922261	ENSSFOP00015021086	ENSSFOP00015036712	ADP-ribosylation factor-like protein 6-interacting protein 6-like.	Raftlin-2-like.	0.441
ssx2ip	LOC108932702	ENSSFOP00015024442	ENSSFOP00015022297	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNase T2 family.	0.525