22 items (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pigw	Uncharacterized protein. (498 aa)
	Gpaa1	Glycosylphosphatidylinositol anchor attachment 1 protein-like. (625 aa)
	pigs	GPI transamidase component PIG-S-like. (576 aa)
	Pgap1	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi. (943 aa)
	pigx	Phosphatidylinositol-glycan biosynthesis class X protein-like. (250 aa)
	pigv	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis. (508 aa)
	pigk	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family. (402 aa)
	pign	GPI ethanolamine phosphate transferase 1-like. (932 aa)
	pigu	Phosphatidylinositol glycan anchor biosynthesis class U protein-like. (435 aa)
	pigp	Phosphatidylinositol N-acetylglucosaminyltransferase subunit P; Part of the complex catalyzing the transfer of N- acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis. (132 aa)
	PIGY	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y. (71 aa)
	pigt	GPI transamidase component PIG-T-like. (641 aa)
	pigm	GPI mannosyltransferase 1; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis. Transfers the first alpha-1,4-mannose to GlcN- acyl-PI during GPI precursor assembly. (420 aa)
	pyurf	Protein preY, mitochondrial-like. (116 aa)
	Z043_106654	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q-like. (612 aa)
	Pigb	Mannosyltransferase. (529 aa)
	piga	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A-like. (469 aa)
	pigh	Phosphatidylinositol N-acetylglucosaminyltransferase subunit H-like. (180 aa)
	LOC108923460	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like. (347 aa)
	pigo	Uncharacterized protein. (1084 aa)
	Z043_118565	Nibrin-like. (523 aa)
	pigf	Phosphatidylinositol-glycan biosynthesis class F protein-like. (219 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gpaa1	LOC108923460	ENSSFOP00015006270	ENSSFOP00015068245	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like.	0.634
Gpaa1	Pgap1	ENSSFOP00015006270	ENSSFOP00015010878	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	GPI inositol-deacylase; Involved in inositol deacylation of GPI-anchored proteins. GPI inositol deacylation may important for efficient transport of GPI- anchored proteins from the endoplasmic reticulum to the Golgi.	0.966
Gpaa1	Pigb	ENSSFOP00015006270	ENSSFOP00015037894	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Mannosyltransferase.	0.689
Gpaa1	Z043_106654	ENSSFOP00015006270	ENSSFOP00015037287	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q-like.	0.568
Gpaa1	Z043_118565	ENSSFOP00015006270	ENSSFOP00015076103	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Nibrin-like.	0.520
Gpaa1	piga	ENSSFOP00015006270	ENSSFOP00015042719	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A-like.	0.606
Gpaa1	pigf	ENSSFOP00015006270	ENSSFOP00015076614	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Phosphatidylinositol-glycan biosynthesis class F protein-like.	0.928
Gpaa1	pigh	ENSSFOP00015006270	ENSSFOP00015055899	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Phosphatidylinositol N-acetylglucosaminyltransferase subunit H-like.	0.683
Gpaa1	pigk	ENSSFOP00015006270	ENSSFOP00015015102	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
Gpaa1	pigm	ENSSFOP00015006270	ENSSFOP00015028441	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	GPI mannosyltransferase 1; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis. Transfers the first alpha-1,4-mannose to GlcN- acyl-PI during GPI precursor assembly.	0.524
Gpaa1	pign	ENSSFOP00015006270	ENSSFOP00015017958	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	GPI ethanolamine phosphate transferase 1-like.	0.413
Gpaa1	pigo	ENSSFOP00015006270	ENSSFOP00015070045	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Uncharacterized protein.	0.967
Gpaa1	pigp	ENSSFOP00015006270	ENSSFOP00015020272	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Phosphatidylinositol N-acetylglucosaminyltransferase subunit P; Part of the complex catalyzing the transfer of N- acetylglucosamine from UDP-N-acetylglucosamine to phosphatidylinositol, the first step of GPI biosynthesis.	0.682
Gpaa1	pigs	ENSSFOP00015006270	ENSSFOP00015007562	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	GPI transamidase component PIG-S-like.	0.999
Gpaa1	pigt	ENSSFOP00015006270	ENSSFOP00015024585	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	GPI transamidase component PIG-T-like.	0.999
Gpaa1	pigu	ENSSFOP00015006270	ENSSFOP00015019719	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Phosphatidylinositol glycan anchor biosynthesis class U protein-like.	0.998
Gpaa1	pigv	ENSSFOP00015006270	ENSSFOP00015015066	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.	0.724
Gpaa1	pigw	ENSSFOP00015006270	ENSSFOP00015000031	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Uncharacterized protein.	0.510
LOC108923460	Gpaa1	ENSSFOP00015068245	ENSSFOP00015006270	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like.	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	0.634
LOC108923460	PIGY	ENSSFOP00015068245	ENSSFOP00015021648	Phosphatidylinositol N-acetylglucosaminyltransferase subunit C-like.	Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y.	0.870