(24 nodes) Mixed, incl. Deactivation of the beta-catenin transactivating complex, and Olfactory bulb development network (Scleropages formosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108926266	Sal-like protein 1-like. (1309 aa)
	nr5a2	Nuclear receptor domain-containing protein. (548 aa)
	SOX3	Sox3-like. (296 aa)
	LOC108933324	Sal-like protein 3-like. (1274 aa)
	bsx	Homeobox domain-containing protein. (227 aa)
	LOC108928930	Uncharacterized protein. (301 aa)
	SALL3	Sal-like protein 3-like. (915 aa)
	ENSSFOP00015023088	SRY-box transcription factor 6. (826 aa)
	LOC108926107	Transcription factor Sox-14-like. (242 aa)
	SOX14	Transcription factor Sox-14-like. (235 aa)
	LOC108932951	Sal-like protein 1-like. (1316 aa)
	POU3F4-2	Uncharacterized protein. (328 aa)
	sall4	Sal-like protein 4-like. (1036 aa)
	Z043_113820	Transcription factor SOX. (354 aa)
	Lin28a	CSP domain-containing protein. (202 aa)
	sox9	Transcription factor Sox-9-A-like. (496 aa)
	LOC108925068	Dmrt1a-like. (283 aa)
	LOC108921337	Transcription factor Sox-7-like. (368 aa)
	Z043_122860	POU domain protein. (452 aa)
	SOX8	Transcription factor SOX7/8/10/18 (SOX group E/F). (461 aa)
	POU3F2	POU domain protein. (379 aa)
	ENSSFOP00015072703	Transcription factor SOX4 (SOX group C). (395 aa)
	ENSSFOP00015073011	annotation not available (318 aa)
	ENSSFOP00015078075	annotation not available (206 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFOP00015023088	ENSSFOP00015072703	ENSSFOP00015023088	ENSSFOP00015072703	SRY-box transcription factor 6.	Transcription factor SOX4 (SOX group C).	0.447
ENSSFOP00015023088	LOC108925068	ENSSFOP00015023088	ENSSFOP00015051323	SRY-box transcription factor 6.	Dmrt1a-like.	0.483
ENSSFOP00015023088	SOX8	ENSSFOP00015023088	ENSSFOP00015063973	SRY-box transcription factor 6.	Transcription factor SOX7/8/10/18 (SOX group E/F).	0.412
ENSSFOP00015023088	Z043_113820	ENSSFOP00015023088	ENSSFOP00015041160	SRY-box transcription factor 6.	Transcription factor SOX.	0.447
ENSSFOP00015023088	sox9	ENSSFOP00015023088	ENSSFOP00015048567	SRY-box transcription factor 6.	Transcription factor Sox-9-A-like.	0.412
ENSSFOP00015072703	ENSSFOP00015023088	ENSSFOP00015072703	ENSSFOP00015023088	Transcription factor SOX4 (SOX group C).	SRY-box transcription factor 6.	0.447
ENSSFOP00015072703	Z043_122860	ENSSFOP00015072703	ENSSFOP00015057437	Transcription factor SOX4 (SOX group C).	POU domain protein.	0.560
ENSSFOP00015078075	LOC108926266	ENSSFOP00015078075	ENSSFOP00015002388	annotation not available	Sal-like protein 1-like.	0.507
ENSSFOP00015078075	LOC108932951	ENSSFOP00015078075	ENSSFOP00015031222	annotation not available	Sal-like protein 1-like.	0.507
ENSSFOP00015078075	LOC108933324	ENSSFOP00015078075	ENSSFOP00015014273	annotation not available	Sal-like protein 3-like.	0.507
ENSSFOP00015078075	SALL3	ENSSFOP00015078075	ENSSFOP00015019055	annotation not available	Sal-like protein 3-like.	0.507
ENSSFOP00015078075	Z043_122860	ENSSFOP00015078075	ENSSFOP00015057437	annotation not available	POU domain protein.	0.513
ENSSFOP00015078075	sall4	ENSSFOP00015078075	ENSSFOP00015033010	annotation not available	Sal-like protein 4-like.	0.507
LOC108921337	Z043_122860	ENSSFOP00015055477	ENSSFOP00015057437	Transcription factor Sox-7-like.	POU domain protein.	0.643
LOC108925068	ENSSFOP00015023088	ENSSFOP00015051323	ENSSFOP00015023088	Dmrt1a-like.	SRY-box transcription factor 6.	0.483
LOC108925068	LOC108928930	ENSSFOP00015051323	ENSSFOP00015017790	Dmrt1a-like.	Uncharacterized protein.	0.498
LOC108925068	SOX3	ENSSFOP00015051323	ENSSFOP00015011664	Dmrt1a-like.	Sox3-like.	0.498
LOC108925068	SOX8	ENSSFOP00015051323	ENSSFOP00015063973	Dmrt1a-like.	Transcription factor SOX7/8/10/18 (SOX group E/F).	0.532
LOC108925068	sall4	ENSSFOP00015051323	ENSSFOP00015033010	Dmrt1a-like.	Sal-like protein 4-like.	0.569
LOC108925068	sox9	ENSSFOP00015051323	ENSSFOP00015048567	Dmrt1a-like.	Transcription factor Sox-9-A-like.	0.616