22 items (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	polr2f	DNA-directed RNA polymerases I, II, and III subunit RPABC2-like. (127 aa)
	polr2c	DNA-directed RNA polymerase II subunit RPB3-like. (275 aa)
	polr1b	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (1218 aa)
	polr2j	DNA-directed RNA polymerase II subunit RPB11-a. (130 aa)
	polr2l	Uncharacterized protein. (67 aa)
	polr2e	DNA-directed RNA polymerases i II and III subunit rpabc1-like. (233 aa)
	polr1d	DNA-directed RNA polymerases I and III subunit RPAC2-like. (114 aa)
	polr3h	DNA-directed RNA polymerase III subunit RPC8-like. (208 aa)
	twistnb	Uncharacterized protein. (361 aa)
	prim1	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (423 aa)
	crcp	RPOL4c domain-containing protein. (149 aa)
	polr3a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1390 aa)
	polr1a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1702 aa)
	polr1c	DNA-directed RNA polymerases I and III subunit RPAC1-like. (361 aa)
	PRIMPOL	DNA-directed primase/polymerase protein-like. (301 aa)
	polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1968 aa)
	Polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1182 aa)
	Primpol	DNA-directed primase/polymerase protein. (110 aa)
	polr2k	DNA-directed RNA polymerases I, II, and III subunit RPABC4-like. (58 aa)
	ENSSFOP00015005678	annotation not available (88 aa)
	polrmt	RPOL_N domain-containing protein. (1279 aa)
	polr3b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFOP00015005678	Polr2b	ENSSFOP00015005678	ENSSFOP00015038365	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.977
ENSSFOP00015005678	polr1b	ENSSFOP00015005678	ENSSFOP00015058506	annotation not available	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.819
ENSSFOP00015005678	polr1c	ENSSFOP00015005678	ENSSFOP00015030984	annotation not available	DNA-directed RNA polymerases I and III subunit RPAC1-like.	0.822
ENSSFOP00015005678	polr2c	ENSSFOP00015005678	ENSSFOP00015056484	annotation not available	DNA-directed RNA polymerase II subunit RPB3-like.	0.968
ENSSFOP00015005678	polr2e	ENSSFOP00015005678	ENSSFOP00015078356	annotation not available	DNA-directed RNA polymerases i II and III subunit rpabc1-like.	0.968
ENSSFOP00015005678	polr2f	ENSSFOP00015005678	ENSSFOP00015043354	annotation not available	DNA-directed RNA polymerases I, II, and III subunit RPABC2-like.	0.968
ENSSFOP00015005678	polr2j	ENSSFOP00015005678	ENSSFOP00015062870	annotation not available	DNA-directed RNA polymerase II subunit RPB11-a.	0.968
ENSSFOP00015005678	polr2k	ENSSFOP00015005678	ENSSFOP00015004399	annotation not available	DNA-directed RNA polymerases I, II, and III subunit RPABC4-like.	0.968
ENSSFOP00015005678	polr2l	ENSSFOP00015005678	ENSSFOP00015067546	annotation not available	Uncharacterized protein.	0.968
ENSSFOP00015005678	polr3b	ENSSFOP00015005678	ENSSFOP00015011617	annotation not available	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.805
PRIMPOL	polrmt	ENSSFOP00015032252	ENSSFOP00015007713	DNA-directed primase/polymerase protein-like.	RPOL_N domain-containing protein.	0.422
PRIMPOL	prim1	ENSSFOP00015032252	ENSSFOP00015020726	DNA-directed primase/polymerase protein-like.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.438
Polr2b	ENSSFOP00015005678	ENSSFOP00015038365	ENSSFOP00015005678	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	annotation not available	0.977
Polr2b	crcp	ENSSFOP00015038365	ENSSFOP00015021430	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RPOL4c domain-containing protein.	0.934
Polr2b	polr1a	ENSSFOP00015038365	ENSSFOP00015030829	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.984
Polr2b	polr1b	ENSSFOP00015038365	ENSSFOP00015058506	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.539
Polr2b	polr1c	ENSSFOP00015038365	ENSSFOP00015030984	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I and III subunit RPAC1-like.	0.978
Polr2b	polr1d	ENSSFOP00015038365	ENSSFOP00015017704	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I and III subunit RPAC2-like.	0.969
Polr2b	polr2a	ENSSFOP00015038365	ENSSFOP00015036623	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
Polr2b	polr2c	ENSSFOP00015038365	ENSSFOP00015056484	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase II subunit RPB3-like.	0.999