35 items (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (263 aa)
	taf13	Transcription initiation factor TFIID subunit 13-like. (124 aa)
	taf10	Transcription initiation factor TFIID subunit 10-like. (191 aa)
	gtf2b	Transcription initiation factor IIB-like. (319 aa)
	gtf2a2	Transcription initiation factor IIA subunit 2-like. (109 aa)
	LOC108926245	TAFH domain-containing protein. (1056 aa)
	Taf7l	Transcription initiation factor TFIID subunit 7-like. (369 aa)
	LOC108932948	Transcription initiation factor TFIID subunit 4-like. (1048 aa)
	taf12	Transcription initiation factor TFIID subunit 12-like. (165 aa)
	ENSSFOP00015044635	annotation not available (79 aa)
	LOC108918651	Transcription initiation factor TFIID subunit 6-like. (668 aa)
	ercc3	TFIIH basal transcription factor complex helicase XPB subunit-like. (810 aa)
	polr2d	DNA-directed RNA polymerase II subunit RPB4-like. (144 aa)
	Z043_105766	Transcription initiation factor TFIID subunit 3-like. (948 aa)
	Z043_124132	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (510 aa)
	Z043_102220	Transcription initiation factor TFIID subunit 3-like. (914 aa)
	TAF6	Transcription initiation factor TFIID subunit 6-like. (689 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	eloa	Transcription elongation factor B polypeptide 3-like. (673 aa)
	LOC108922259	General transcription factor IIA, 1, 19/37kDa-like. (367 aa)
	dr1	Protein Dr1-like. (176 aa)
	gtf2e1	General transcription factor IIE subunit 1-like. (449 aa)
	TAF4B	Transcription initiation factor TFIID subunit 4-like. (1169 aa)
	GTF2A1	Transcription initiation factor IIA subunit 1-like isoform X1. (359 aa)
	Taf8	Transcription initiation factor TFIID subunit 8-like. (310 aa)
	LOC108932810	Uncharacterized protein. (600 aa)
	gtf2h5	TFIIH basal transcription factor complex TTD-A subunit. (71 aa)
	ccnh	CYCLIN domain-containing protein; Belongs to the cyclin family. (337 aa)
	taf6l	TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L-like. (700 aa)
	gtf2e2	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (290 aa)
	polr2g	DNA-directed RNA polymerase II subunit RPB7-like. (180 aa)
	taf11	Transcription initiation factor TFIID subunit 11-like. (205 aa)
	LOC108934435	Uncharacterized protein. (1972 aa)
	Z043_113326	Transcription initiation factor TFIID subunit 4-like. (1008 aa)
	Taf2	Transcription initiation factor TFIID subunit 2-like. (1220 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSFOP00015044635	LOC108918651	ENSSFOP00015044635	ENSSFOP00015039771	annotation not available	Transcription initiation factor TFIID subunit 6-like.	0.747
ENSSFOP00015044635	LOC108926245	ENSSFOP00015044635	ENSSFOP00015062761	annotation not available	TAFH domain-containing protein.	0.762
ENSSFOP00015044635	LOC108932948	ENSSFOP00015044635	ENSSFOP00015053912	annotation not available	Transcription initiation factor TFIID subunit 4-like.	0.762
ENSSFOP00015044635	LOC108934435	ENSSFOP00015044635	ENSSFOP00015006614	annotation not available	Uncharacterized protein.	0.815
ENSSFOP00015044635	TAF4B	ENSSFOP00015044635	ENSSFOP00015015894	annotation not available	Transcription initiation factor TFIID subunit 4-like.	0.762
ENSSFOP00015044635	TAF6	ENSSFOP00015044635	ENSSFOP00015036253	annotation not available	Transcription initiation factor TFIID subunit 6-like.	0.747
ENSSFOP00015044635	Taf2	ENSSFOP00015044635	ENSSFOP00015007411	annotation not available	Transcription initiation factor TFIID subunit 2-like.	0.836
ENSSFOP00015044635	Taf7l	ENSSFOP00015044635	ENSSFOP00015059204	annotation not available	Transcription initiation factor TFIID subunit 7-like.	0.816
ENSSFOP00015044635	Taf8	ENSSFOP00015044635	ENSSFOP00015020661	annotation not available	Transcription initiation factor TFIID subunit 8-like.	0.801
ENSSFOP00015044635	Z043_102220	ENSSFOP00015044635	ENSSFOP00015037437	annotation not available	Transcription initiation factor TFIID subunit 3-like.	0.668
ENSSFOP00015044635	Z043_105766	ENSSFOP00015044635	ENSSFOP00015037686	annotation not available	Transcription initiation factor TFIID subunit 3-like.	0.668
ENSSFOP00015044635	Z043_113326	ENSSFOP00015044635	ENSSFOP00015007079	annotation not available	Transcription initiation factor TFIID subunit 4-like.	0.762
ENSSFOP00015044635	Z043_124132	ENSSFOP00015044635	ENSSFOP00015037489	annotation not available	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.926
ENSSFOP00015044635	ccnh	ENSSFOP00015044635	ENSSFOP00015026468	annotation not available	CYCLIN domain-containing protein; Belongs to the cyclin family.	0.812
ENSSFOP00015044635	ercc3	ENSSFOP00015044635	ENSSFOP00015039740	annotation not available	TFIIH basal transcription factor complex helicase XPB subunit-like.	0.915
ENSSFOP00015044635	gtf2a2	ENSSFOP00015044635	ENSSFOP00015066274	annotation not available	Transcription initiation factor IIA subunit 2-like.	0.963
ENSSFOP00015044635	gtf2b	ENSSFOP00015044635	ENSSFOP00015070635	annotation not available	Transcription initiation factor IIB-like.	0.946
ENSSFOP00015044635	gtf2e1	ENSSFOP00015044635	ENSSFOP00015015716	annotation not available	General transcription factor IIE subunit 1-like.	0.938
ENSSFOP00015044635	gtf2e2	ENSSFOP00015044635	ENSSFOP00015000472	annotation not available	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.931
ENSSFOP00015044635	gtf2f2	ENSSFOP00015044635	ENSSFOP00015008836	annotation not available	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.937