5 items (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pigs	GPI transamidase component PIG-S-like. (576 aa)
	pigt	GPI transamidase component PIG-T-like. (641 aa)
	Gpaa1	Glycosylphosphatidylinositol anchor attachment 1 protein-like. (625 aa)
	pigk	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family. (402 aa)
	pigu	Phosphatidylinositol glycan anchor biosynthesis class U protein-like. (435 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Gpaa1	pigk	ENSSFOP00015006270	ENSSFOP00015015102	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
Gpaa1	pigs	ENSSFOP00015006270	ENSSFOP00015007562	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	GPI transamidase component PIG-S-like.	0.999
Gpaa1	pigt	ENSSFOP00015006270	ENSSFOP00015024585	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	GPI transamidase component PIG-T-like.	0.999
Gpaa1	pigu	ENSSFOP00015006270	ENSSFOP00015019719	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	Phosphatidylinositol glycan anchor biosynthesis class U protein-like.	0.998
pigk	Gpaa1	ENSSFOP00015015102	ENSSFOP00015006270	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	0.999
pigk	pigs	ENSSFOP00015015102	ENSSFOP00015007562	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	GPI transamidase component PIG-S-like.	0.999
pigk	pigt	ENSSFOP00015015102	ENSSFOP00015024585	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	GPI transamidase component PIG-T-like.	0.999
pigk	pigu	ENSSFOP00015015102	ENSSFOP00015019719	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Phosphatidylinositol glycan anchor biosynthesis class U protein-like.	0.998
pigs	Gpaa1	ENSSFOP00015007562	ENSSFOP00015006270	GPI transamidase component PIG-S-like.	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	0.999
pigs	pigk	ENSSFOP00015007562	ENSSFOP00015015102	GPI transamidase component PIG-S-like.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
pigs	pigt	ENSSFOP00015007562	ENSSFOP00015024585	GPI transamidase component PIG-S-like.	GPI transamidase component PIG-T-like.	0.999
pigs	pigu	ENSSFOP00015007562	ENSSFOP00015019719	GPI transamidase component PIG-S-like.	Phosphatidylinositol glycan anchor biosynthesis class U protein-like.	0.998
pigt	Gpaa1	ENSSFOP00015024585	ENSSFOP00015006270	GPI transamidase component PIG-T-like.	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	0.999
pigt	pigk	ENSSFOP00015024585	ENSSFOP00015015102	GPI transamidase component PIG-T-like.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
pigt	pigs	ENSSFOP00015024585	ENSSFOP00015007562	GPI transamidase component PIG-T-like.	GPI transamidase component PIG-S-like.	0.999
pigt	pigu	ENSSFOP00015024585	ENSSFOP00015019719	GPI transamidase component PIG-T-like.	Phosphatidylinositol glycan anchor biosynthesis class U protein-like.	0.998
pigu	Gpaa1	ENSSFOP00015019719	ENSSFOP00015006270	Phosphatidylinositol glycan anchor biosynthesis class U protein-like.	Glycosylphosphatidylinositol anchor attachment 1 protein-like.	0.998
pigu	pigk	ENSSFOP00015019719	ENSSFOP00015015102	Phosphatidylinositol glycan anchor biosynthesis class U protein-like.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.998
pigu	pigs	ENSSFOP00015019719	ENSSFOP00015007562	Phosphatidylinositol glycan anchor biosynthesis class U protein-like.	GPI transamidase component PIG-S-like.	0.998
pigu	pigt	ENSSFOP00015019719	ENSSFOP00015024585	Phosphatidylinositol glycan anchor biosynthesis class U protein-like.	GPI transamidase component PIG-T-like.	0.998