(15 nodes) Alpha-catenin binding network (Scleropages formosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pkp3	Plakophilin-3-like. (780 aa)
	VCL	Vinculin-like. (1133 aa)
	LOC108940919	Plakophilin-3-like. (858 aa)
	LOC108939667	Vinculin-like. (1138 aa)
	Z043_124384	Uncharacterized protein. (205 aa)
	LOC108930938	LIM domain-containing protein ajuba-like. (693 aa)
	numbl	Protein numb-like. (689 aa)
	Cdh26	Cadherin-like protein 26-like; Cadherins are calcium-dependent cell adhesion proteins. (659 aa)
	ENSSFOP00015014887	annotation not available (334 aa)
	LOC108927865	Catenin beta-1-like. (779 aa)
	LOC108924076	Protein numb-like. (647 aa)
	CTNNB1	Catenin beta 1. (792 aa)
	ENSSFOP00015079335	Ajuba LIM protein. (675 aa)
	LOC108918758	Junction plakoglobin-like. (730 aa)
	LOC108919627	Protein numb-like. (677 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTNNB1	ENSSFOP00015014887	ENSSFOP00015078052	ENSSFOP00015014887	Catenin beta 1.	annotation not available	0.825
CTNNB1	LOC108918758	ENSSFOP00015078052	ENSSFOP00015004264	Catenin beta 1.	Junction plakoglobin-like.	0.823
CTNNB1	LOC108939667	ENSSFOP00015078052	ENSSFOP00015024069	Catenin beta 1.	Vinculin-like.	0.744
CTNNB1	LOC108940919	ENSSFOP00015078052	ENSSFOP00015014797	Catenin beta 1.	Plakophilin-3-like.	0.510
CTNNB1	VCL	ENSSFOP00015078052	ENSSFOP00015027252	Catenin beta 1.	Vinculin-like.	0.744
CTNNB1	Z043_124384	ENSSFOP00015078052	ENSSFOP00015014913	Catenin beta 1.	Uncharacterized protein.	0.828
CTNNB1	pkp3	ENSSFOP00015078052	ENSSFOP00015046333	Catenin beta 1.	Plakophilin-3-like.	0.510
ENSSFOP00015014887	CTNNB1	ENSSFOP00015014887	ENSSFOP00015078052	annotation not available	Catenin beta 1.	0.825
ENSSFOP00015014887	LOC108927865	ENSSFOP00015014887	ENSSFOP00015030968	annotation not available	Catenin beta-1-like.	0.825
ENSSFOP00015014887	LOC108939667	ENSSFOP00015014887	ENSSFOP00015024069	annotation not available	Vinculin-like.	0.683
ENSSFOP00015014887	LOC108940919	ENSSFOP00015014887	ENSSFOP00015014797	annotation not available	Plakophilin-3-like.	0.602
ENSSFOP00015014887	VCL	ENSSFOP00015014887	ENSSFOP00015027252	annotation not available	Vinculin-like.	0.683
ENSSFOP00015014887	pkp3	ENSSFOP00015014887	ENSSFOP00015046333	annotation not available	Plakophilin-3-like.	0.602
LOC108918758	CTNNB1	ENSSFOP00015004264	ENSSFOP00015078052	Junction plakoglobin-like.	Catenin beta 1.	0.823
LOC108918758	LOC108927865	ENSSFOP00015004264	ENSSFOP00015030968	Junction plakoglobin-like.	Catenin beta-1-like.	0.823
LOC108918758	LOC108939667	ENSSFOP00015004264	ENSSFOP00015024069	Junction plakoglobin-like.	Vinculin-like.	0.683
LOC108918758	LOC108940919	ENSSFOP00015004264	ENSSFOP00015014797	Junction plakoglobin-like.	Plakophilin-3-like.	0.602
LOC108918758	VCL	ENSSFOP00015004264	ENSSFOP00015027252	Junction plakoglobin-like.	Vinculin-like.	0.683
LOC108918758	pkp3	ENSSFOP00015004264	ENSSFOP00015046333	Junction plakoglobin-like.	Plakophilin-3-like.	0.602
LOC108919627	LOC108924076	ENSSFOP00015009896	ENSSFOP00015056649	Protein numb-like.	Protein numb-like.	0.901