(9 nodes) Mesendoderm development network (Scleropages formosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SMAD4	Mothers against decapentaplegic homolog. (551 aa)
	Apln	Apelin. (75 aa)
	pitx2	Pituitary homeobox 2-like. (315 aa)
	osr1	Protein odd-skipped-related 1-like. (252 aa)
	LOC108941913	Mothers against decapentaplegic homolog 4-like. (564 aa)
	LOC108942527	Mothers against decapentaplegic homolog. (559 aa)
	apela	Apelin receptor early endogenous ligand. (54 aa)
	ENSSFOP00015016215	annotation not available (83 aa)
	foxh1	Forkhead box protein H1-like. (408 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Apln	apela	ENSSFOP00015009207	ENSSFOP00015021973	Apelin.	Apelin receptor early endogenous ligand.	0.520
ENSSFOP00015016215	apela	ENSSFOP00015016215	ENSSFOP00015021973	annotation not available	Apelin receptor early endogenous ligand.	0.520
LOC108941913	foxh1	ENSSFOP00015064750	ENSSFOP00015015966	Mothers against decapentaplegic homolog 4-like.	Forkhead box protein H1-like.	0.691
LOC108942527	foxh1	ENSSFOP00015047412	ENSSFOP00015015966	Mothers against decapentaplegic homolog.	Forkhead box protein H1-like.	0.691
SMAD4	foxh1	ENSSFOP00015015148	ENSSFOP00015015966	Mothers against decapentaplegic homolog.	Forkhead box protein H1-like.	0.691
apela	Apln	ENSSFOP00015021973	ENSSFOP00015009207	Apelin receptor early endogenous ligand.	Apelin.	0.520
apela	ENSSFOP00015016215	ENSSFOP00015021973	ENSSFOP00015016215	Apelin receptor early endogenous ligand.	annotation not available	0.520
foxh1	LOC108941913	ENSSFOP00015015966	ENSSFOP00015064750	Forkhead box protein H1-like.	Mothers against decapentaplegic homolog 4-like.	0.691
foxh1	LOC108942527	ENSSFOP00015015966	ENSSFOP00015047412	Forkhead box protein H1-like.	Mothers against decapentaplegic homolog.	0.691
foxh1	SMAD4	ENSSFOP00015015966	ENSSFOP00015015148	Forkhead box protein H1-like.	Mothers against decapentaplegic homolog.	0.691