(30 nodes) Face development network (Scleropages formosus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sgpl1	Sphingosine-1-phosphate lyase 1-like. (578 aa)
	tgfb3	Transforming growth factor beta; Belongs to the TGF-beta family. (416 aa)
	LOC108940870	Calponin-homology (CH) domain-containing protein. (623 aa)
	MSX1	Homeobox protein MSX-1. (261 aa)
	Bbs4	Bardet-Biedl syndrome 4 protein-like. (518 aa)
	LOC108927085	Serum response factor-like. (578 aa)
	LOC108919923	AN1-type zinc finger protein 5-like. (213 aa)
	csrnp1	Cysteine/serine-rich nuclear protein 1-like. (568 aa)
	EDNRA-2	G_PROTEIN_RECEP_F1_2 domain-containing protein. (434 aa)
	LOC108924316	Uncharacterized protein. (383 aa)
	LOC108924734	TGF beta-1-like. (382 aa)
	zfand5	AN1-type zinc finger protein 5-like. (217 aa)
	CRISPLD1	Cysteine-rich secretory protein LCCL domain-containing 1-like. (509 aa)
	LOC108933568	Uncharacterized protein. (604 aa)
	LEF1	Lymphoid enhancer-binding factor 1-like protein-like. (404 aa)
	Z043_107845	Cysteine-rich secretory protein LCCL domain-containing 2-like. (516 aa)
	LOC108926303	Ankyrin repeat domain-containing protein 11-like. (2819 aa)
	EDNRA	Endothelin-1 receptor-like; Belongs to the G-protein coupled receptor 1 family. (479 aa)
	ankrd11	Ankyrin repeat domain-containing protein 11-like. (2819 aa)
	Z043_107528	Cysteine-rich secretory protein LCCL domain-containing 2-like. (494 aa)
	LOC108933453	TGF-beta1B-like. (383 aa)
	EP300	E1A binding protein p300. (2377 aa)
	LOC108921339	Uncharacterized protein. (220 aa)
	dkk1	Dickkopf-related protein 1-like. (249 aa)
	LOC108926053	Uncharacterized protein. (2686 aa)
	mkks	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin. (616 aa)
	Z043_119432	Dickkopf-related protein 1-like. (227 aa)
	specc1l	Cytospin-A-like. (1131 aa)
	pitx2	Pituitary homeobox 2-like. (315 aa)
	LOC108937737	Uncharacterized protein. (783 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDNRA	EDNRA-2	ENSSFOP00015025410	ENSSFOP00015059180	Endothelin-1 receptor-like; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.902
EDNRA-2	EDNRA	ENSSFOP00015059180	ENSSFOP00015025410	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Endothelin-1 receptor-like; Belongs to the G-protein coupled receptor 1 family.	0.902
EP300	LEF1	ENSSFOP00015022327	ENSSFOP00015039814	E1A binding protein p300.	Lymphoid enhancer-binding factor 1-like protein-like.	0.651
EP300	LOC108924316	ENSSFOP00015022327	ENSSFOP00015050552	E1A binding protein p300.	Uncharacterized protein.	0.651
EP300	LOC108924734	ENSSFOP00015022327	ENSSFOP00015049261	E1A binding protein p300.	TGF beta-1-like.	0.507
EP300	LOC108933453	ENSSFOP00015022327	ENSSFOP00015023510	E1A binding protein p300.	TGF-beta1B-like.	0.507
LEF1	EP300	ENSSFOP00015039814	ENSSFOP00015022327	Lymphoid enhancer-binding factor 1-like protein-like.	E1A binding protein p300.	0.651
LEF1	LOC108926053	ENSSFOP00015039814	ENSSFOP00015017542	Lymphoid enhancer-binding factor 1-like protein-like.	Uncharacterized protein.	0.963
LEF1	MSX1	ENSSFOP00015039814	ENSSFOP00015070584	Lymphoid enhancer-binding factor 1-like protein-like.	Homeobox protein MSX-1.	0.433
LOC108924316	EP300	ENSSFOP00015050552	ENSSFOP00015022327	Uncharacterized protein.	E1A binding protein p300.	0.651
LOC108924316	LOC108926053	ENSSFOP00015050552	ENSSFOP00015017542	Uncharacterized protein.	Uncharacterized protein.	0.963
LOC108924316	MSX1	ENSSFOP00015050552	ENSSFOP00015070584	Uncharacterized protein.	Homeobox protein MSX-1.	0.433
LOC108924734	EP300	ENSSFOP00015049261	ENSSFOP00015022327	TGF beta-1-like.	E1A binding protein p300.	0.507
LOC108924734	LOC108926053	ENSSFOP00015049261	ENSSFOP00015017542	TGF beta-1-like.	Uncharacterized protein.	0.507
LOC108924734	LOC108933453	ENSSFOP00015049261	ENSSFOP00015023510	TGF beta-1-like.	TGF-beta1B-like.	0.901
LOC108924734	tgfb3	ENSSFOP00015049261	ENSSFOP00015073419	TGF beta-1-like.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.692
LOC108926053	LEF1	ENSSFOP00015017542	ENSSFOP00015039814	Uncharacterized protein.	Lymphoid enhancer-binding factor 1-like protein-like.	0.963
LOC108926053	LOC108924316	ENSSFOP00015017542	ENSSFOP00015050552	Uncharacterized protein.	Uncharacterized protein.	0.963
LOC108926053	LOC108924734	ENSSFOP00015017542	ENSSFOP00015049261	Uncharacterized protein.	TGF beta-1-like.	0.507
LOC108926053	LOC108933453	ENSSFOP00015017542	ENSSFOP00015023510	Uncharacterized protein.	TGF-beta1B-like.	0.507