24 items (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BDNF	Brain-derived neurotrophic factor. (261 aa)
	LOC108936471	Cerebral dopamine neurotrophic factor-like. (177 aa)
	vegfd	Vascular endothelial growth factor D-like. (310 aa)
	wnt2b	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (391 aa)
	LOC108923842	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (375 aa)
	PHOX2B	Paired mesoderm homeobox protein 2B-like. (289 aa)
	LOC108942035	PAS domain-containing protein. (779 aa)
	LOC108941156	Aryl hydrocarbon receptor nuclear translocator 2-like. (713 aa)
	LOC108930479	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (395 aa)
	LOC108925152	Aryl hydrocarbon receptor nuclear translocator-like. (782 aa)
	LOC108941936	Mesencephalic astrocyte-derived neurotrophic factor-like. (181 aa)
	LOC108939635	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (371 aa)
	Z043_112259	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (372 aa)
	LOC108929261	Single-minded1-like. (728 aa)
	EN1	Homeobox protein engrailed-1-B isoform X1. (285 aa)
	en1	Homeobox protein engrailed-1-B. (285 aa)
	sim1	PAS domain-containing protein. (725 aa)
	smo	Smoothened-like; Belongs to the G-protein coupled receptor Fz/Smo family. (816 aa)
	MANF	Mesencephalic astrocyte-derived neurotrophic factor-like. (178 aa)
	LOC108921462	Tyrosine-protein kinase RYK-like. (645 aa)
	SIM2	Single-minded2-like. (729 aa)
	RSPO2	R-spondin-2-like. (253 aa)
	LOC108926074	Protein kinase domain-containing protein. (622 aa)
	phox2b	Paired mesoderm homeobox protein 2B-like. (286 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDNF	LOC108936471	ENSSFOP00015063919	ENSSFOP00015000473	Brain-derived neurotrophic factor.	Cerebral dopamine neurotrophic factor-like.	0.553
BDNF	smo	ENSSFOP00015063919	ENSSFOP00015062022	Brain-derived neurotrophic factor.	Smoothened-like; Belongs to the G-protein coupled receptor Fz/Smo family.	0.546
LOC108921462	LOC108926074	ENSSFOP00015066509	ENSSFOP00015071627	Tyrosine-protein kinase RYK-like.	Protein kinase domain-containing protein.	0.900
LOC108921462	LOC108930479	ENSSFOP00015066509	ENSSFOP00015029405	Tyrosine-protein kinase RYK-like.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.629
LOC108921462	wnt2b	ENSSFOP00015066509	ENSSFOP00015013121	Tyrosine-protein kinase RYK-like.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.629
LOC108925152	LOC108929261	ENSSFOP00015034783	ENSSFOP00015046651	Aryl hydrocarbon receptor nuclear translocator-like.	Single-minded1-like.	0.688
LOC108925152	SIM2	ENSSFOP00015034783	ENSSFOP00015066776	Aryl hydrocarbon receptor nuclear translocator-like.	Single-minded2-like.	0.688
LOC108925152	sim1	ENSSFOP00015034783	ENSSFOP00015055704	Aryl hydrocarbon receptor nuclear translocator-like.	PAS domain-containing protein.	0.688
LOC108926074	LOC108921462	ENSSFOP00015071627	ENSSFOP00015066509	Protein kinase domain-containing protein.	Tyrosine-protein kinase RYK-like.	0.900
LOC108926074	LOC108930479	ENSSFOP00015071627	ENSSFOP00015029405	Protein kinase domain-containing protein.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.629
LOC108926074	wnt2b	ENSSFOP00015071627	ENSSFOP00015013121	Protein kinase domain-containing protein.	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	0.629
LOC108929261	LOC108925152	ENSSFOP00015046651	ENSSFOP00015034783	Single-minded1-like.	Aryl hydrocarbon receptor nuclear translocator-like.	0.688
LOC108929261	LOC108941156	ENSSFOP00015046651	ENSSFOP00015025937	Single-minded1-like.	Aryl hydrocarbon receptor nuclear translocator 2-like.	0.688
LOC108929261	LOC108942035	ENSSFOP00015046651	ENSSFOP00015025279	Single-minded1-like.	PAS domain-containing protein.	0.688
LOC108930479	LOC108921462	ENSSFOP00015029405	ENSSFOP00015066509	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Tyrosine-protein kinase RYK-like.	0.629
LOC108930479	LOC108926074	ENSSFOP00015029405	ENSSFOP00015071627	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Protein kinase domain-containing protein.	0.629
LOC108930479	smo	ENSSFOP00015029405	ENSSFOP00015062022	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Smoothened-like; Belongs to the G-protein coupled receptor Fz/Smo family.	0.493
LOC108936471	BDNF	ENSSFOP00015000473	ENSSFOP00015063919	Cerebral dopamine neurotrophic factor-like.	Brain-derived neurotrophic factor.	0.553
LOC108941156	LOC108929261	ENSSFOP00015025937	ENSSFOP00015046651	Aryl hydrocarbon receptor nuclear translocator 2-like.	Single-minded1-like.	0.688
LOC108941156	SIM2	ENSSFOP00015025937	ENSSFOP00015066776	Aryl hydrocarbon receptor nuclear translocator 2-like.	Single-minded2-like.	0.688