16 items (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sim1	PAS domain-containing protein. (725 aa)
	PDE8A	Phosphodiesterase. (817 aa)
	ncoa1	Nuclear receptor coactivator 1-like. (1366 aa)
	LOC108929261	Single-minded1-like. (728 aa)
	Z043_116779	Uncharacterized protein. (812 aa)
	LOC108929404	Aryl hydrocarbon receptor 2-like. (1045 aa)
	NCOA3	Nuclear receptor coactivator 3-like. (1430 aa)
	LOC108942426	Aryl hydrocarbon receptor nuclear translocator-like protein 1-like. (628 aa)
	LOC108925152	Aryl hydrocarbon receptor nuclear translocator-like. (782 aa)
	LOC108924283	Aryl hydrocarbon receptor 2-like. (1056 aa)
	Z043_109809	Hypoxia-inducible factor 3a-like. (588 aa)
	LOC108927318	Uncharacterized protein. (1048 aa)
	Z043_122809	Neuronal PAS domain-containing protein 1-like. (765 aa)
	LOC108924212	Aryl hydrocarbon receptor-like. (983 aa)
	LOC108931035	Neuronal PAS domain-containing protein 2-like. (884 aa)
	LOC108941156	Aryl hydrocarbon receptor nuclear translocator 2-like. (713 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108924212	LOC108925152	ENSSFOP00015011190	ENSSFOP00015034783	Aryl hydrocarbon receptor-like.	Aryl hydrocarbon receptor nuclear translocator-like.	0.796
LOC108924212	LOC108931035	ENSSFOP00015011190	ENSSFOP00015013728	Aryl hydrocarbon receptor-like.	Neuronal PAS domain-containing protein 2-like.	0.613
LOC108924212	LOC108941156	ENSSFOP00015011190	ENSSFOP00015025937	Aryl hydrocarbon receptor-like.	Aryl hydrocarbon receptor nuclear translocator 2-like.	0.796
LOC108924212	LOC108942426	ENSSFOP00015011190	ENSSFOP00015033233	Aryl hydrocarbon receptor-like.	Aryl hydrocarbon receptor nuclear translocator-like protein 1-like.	0.613
LOC108924212	NCOA3	ENSSFOP00015011190	ENSSFOP00015032884	Aryl hydrocarbon receptor-like.	Nuclear receptor coactivator 3-like.	0.613
LOC108924212	Z043_116779	ENSSFOP00015011190	ENSSFOP00015042601	Aryl hydrocarbon receptor-like.	Uncharacterized protein.	0.613
LOC108924212	ncoa1	ENSSFOP00015011190	ENSSFOP00015051888	Aryl hydrocarbon receptor-like.	Nuclear receptor coactivator 1-like.	0.613
LOC108924283	LOC108925152	ENSSFOP00015011144	ENSSFOP00015034783	Aryl hydrocarbon receptor 2-like.	Aryl hydrocarbon receptor nuclear translocator-like.	0.840
LOC108924283	LOC108931035	ENSSFOP00015011144	ENSSFOP00015013728	Aryl hydrocarbon receptor 2-like.	Neuronal PAS domain-containing protein 2-like.	0.613
LOC108924283	LOC108941156	ENSSFOP00015011144	ENSSFOP00015025937	Aryl hydrocarbon receptor 2-like.	Aryl hydrocarbon receptor nuclear translocator 2-like.	0.796
LOC108924283	LOC108942426	ENSSFOP00015011144	ENSSFOP00015033233	Aryl hydrocarbon receptor 2-like.	Aryl hydrocarbon receptor nuclear translocator-like protein 1-like.	0.613
LOC108924283	NCOA3	ENSSFOP00015011144	ENSSFOP00015032884	Aryl hydrocarbon receptor 2-like.	Nuclear receptor coactivator 3-like.	0.613
LOC108924283	Z043_116779	ENSSFOP00015011144	ENSSFOP00015042601	Aryl hydrocarbon receptor 2-like.	Uncharacterized protein.	0.613
LOC108924283	ncoa1	ENSSFOP00015011144	ENSSFOP00015051888	Aryl hydrocarbon receptor 2-like.	Nuclear receptor coactivator 1-like.	0.613
LOC108925152	LOC108924212	ENSSFOP00015034783	ENSSFOP00015011190	Aryl hydrocarbon receptor nuclear translocator-like.	Aryl hydrocarbon receptor-like.	0.796
LOC108925152	LOC108924283	ENSSFOP00015034783	ENSSFOP00015011144	Aryl hydrocarbon receptor nuclear translocator-like.	Aryl hydrocarbon receptor 2-like.	0.840
LOC108925152	LOC108927318	ENSSFOP00015034783	ENSSFOP00015000356	Aryl hydrocarbon receptor nuclear translocator-like.	Uncharacterized protein.	0.796
LOC108925152	LOC108929261	ENSSFOP00015034783	ENSSFOP00015046651	Aryl hydrocarbon receptor nuclear translocator-like.	Single-minded1-like.	0.688
LOC108925152	LOC108929404	ENSSFOP00015034783	ENSSFOP00015027301	Aryl hydrocarbon receptor nuclear translocator-like.	Aryl hydrocarbon receptor 2-like.	0.840
LOC108925152	Z043_109809	ENSSFOP00015034783	ENSSFOP00015010019	Aryl hydrocarbon receptor nuclear translocator-like.	Hypoxia-inducible factor 3a-like.	0.848