4 items (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubl4a	Ubiquitin-like protein 4A-like. (157 aa)
	LOC108930839	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	fau	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (133 aa)
	LOC108934156	Ubiquitin domain-containing protein 1-like. (269 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108930839	fau	ENSSFOP00015001178	ENSSFOP00015030671	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
LOC108930839	ubl4a	ENSSFOP00015001178	ENSSFOP00015018352	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like protein 4A-like.	0.658
fau	LOC108930839	ENSSFOP00015030671	ENSSFOP00015001178	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
fau	ubl4a	ENSSFOP00015030671	ENSSFOP00015018352	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like protein 4A-like.	0.658
ubl4a	LOC108930839	ENSSFOP00015018352	ENSSFOP00015001178	Ubiquitin-like protein 4A-like.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.658
ubl4a	fau	ENSSFOP00015018352	ENSSFOP00015030671	Ubiquitin-like protein 4A-like.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.658