STRINGSTRING
nelfcd nelfcd tcea1 tcea1 polr2a polr2a Z043_102220 Z043_102220 Z043_124132 Z043_124132 Z043_105766 Z043_105766 polr2d polr2d Polr2b Polr2b ercc3 ercc3 LOC108918651 LOC108918651 LOC108925657 LOC108925657 nelfa nelfa polr2f polr2f ENSSFOP00015044635 ENSSFOP00015044635 supt4h1 supt4h1 NCBP1 NCBP1 tbp tbp taf12 taf12 taf5l taf5l eloc eloc LOC108932948 LOC108932948 LOC108921416 LOC108921416 polr2c polr2c taf5 taf5 Taf7l Taf7l LOC108937855 LOC108937855 Z043_123412 Z043_123412 LOC108926245 LOC108926245 eloc-2 eloc-2 eaf2 eaf2 polr2j polr2j gtf2a2 gtf2a2 polr2l polr2l CCNT2-2 CCNT2-2 ctr9 ctr9 LOC108919432 LOC108919432 Z043_113935 Z043_113935 gtf2b gtf2b LOC108919817 LOC108919817 tbpl1 tbpl1 ctdp1 ctdp1 polr2e polr2e leo1 leo1 cdc73 cdc73 TAF6 TAF6 GTF2A1 GTF2A1 gtf2h1 gtf2h1 ccnq ccnq cinp cinp LOC108940655 LOC108940655 TAF4B TAF4B gtf2e1 gtf2e1 Gtf2h2c Gtf2h2c LOC108920015 LOC108920015 ENSSFOP00015014159 ENSSFOP00015014159 taf10 taf10 rtf1 rtf1 taf13 taf13 slc39a13 slc39a13 ercc2 ercc2 supt5h supt5h gtf2f2 gtf2f2 cdk7 cdk7 Supt6h Supt6h Taf2 Taf2 Z043_113326 Z043_113326 LOC108934435 LOC108934435 taf11 taf11 ENSSFOP00015005678 ENSSFOP00015005678 ell ell CCNK CCNK polr2k polr2k mllt3 mllt3 polr2g polr2g LOC108934430 LOC108934430 Z043_107137 Z043_107137 LOC108941694 LOC108941694 ELOB ELOB gtf2e2 gtf2e2 tceanc tceanc polr2i polr2i eloa eloa LOC108922259 LOC108922259 LOC108935875 LOC108935875 wdr61 wdr61 LOC108936227 LOC108936227 Tceanc2 Tceanc2 ENSSFOP00015032353 ENSSFOP00015032353 CCNT2 CCNT2 aff4 aff4 paf1 paf1 gtf2h3 gtf2h3 spag16 spag16 nelfe nelfe ccnh ccnh gtf2h5 gtf2h5 LOC108921333 LOC108921333 PRF1 PRF1 LOC108929656 LOC108929656 gtf2h4 gtf2h4 LOC108921603 LOC108921603 cdk9 cdk9 polr2h polr2h LOC108932810 LOC108932810 Nelfb Nelfb eaf1 eaf1 mnat1 mnat1 LOC108930646 LOC108930646
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nelfcdNegative elongation factor D-like. (605 aa)
tcea1Uncharacterized protein. (318 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1968 aa)
Z043_102220Transcription initiation factor TFIID subunit 3-like. (914 aa)
Z043_124132Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (510 aa)
Z043_105766Transcription initiation factor TFIID subunit 3-like. (948 aa)
polr2dDNA-directed RNA polymerase II subunit RPB4-like. (144 aa)
Polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1182 aa)
ercc3TFIIH basal transcription factor complex helicase XPB subunit-like. (810 aa)
LOC108918651Transcription initiation factor TFIID subunit 6-like. (668 aa)
LOC108925657Transcription elongation factor A protein 2-like. (322 aa)
nelfaHDAg domain-containing protein. (547 aa)
polr2fDNA-directed RNA polymerases I, II, and III subunit RPABC2-like. (127 aa)
ENSSFOP00015044635annotation not available (79 aa)
supt4h1Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
NCBP1Nuclear cap-binding protein subunit 1-like. (843 aa)
tbpTATA-box-binding protein-like. (316 aa)
taf12Transcription initiation factor TFIID subunit 12-like. (165 aa)
taf5lTAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L-like. (594 aa)
elocTranscription elongation factor B polypeptide 1-like; Belongs to the SKP1 family. (112 aa)
LOC108932948Transcription initiation factor TFIID subunit 4-like. (1048 aa)
LOC108921416RNA polymerase II elongation factor ELL-like. (562 aa)
polr2cDNA-directed RNA polymerase II subunit RPB3-like. (275 aa)
taf5Transcription initiation factor TFIID subunit 5-like. (764 aa)
Taf7lTranscription initiation factor TFIID subunit 7-like. (369 aa)
LOC108937855FACT complex subunit SPT16-like. (1058 aa)
Z043_123412Uncharacterized protein. (286 aa)
LOC108926245TAFH domain-containing protein. (1056 aa)
eloc-2elongin-C. (113 aa)
eaf2ELL-associated factor 2-like. (263 aa)
polr2jDNA-directed RNA polymerase II subunit RPB11-a. (130 aa)
gtf2a2Transcription initiation factor IIA subunit 2-like. (109 aa)
polr2lUncharacterized protein. (67 aa)
CCNT2-2Cyclin-T2-like. (643 aa)
ctr9RNA polymerase-associated protein CTR9-like. (1159 aa)
LOC108919432Transcription elongation factor B polypeptide 2-like. (119 aa)
Z043_113935Cyclin-T1-like; Belongs to the cyclin family. (499 aa)
gtf2bTranscription initiation factor IIB-like. (319 aa)
LOC108919817Protein ENL-like. (617 aa)
tbpl1TATA box-binding protein-like protein 1-like. (194 aa)
ctdp1RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (987 aa)
polr2eDNA-directed RNA polymerases i II and III subunit rpabc1-like. (233 aa)
leo1RNA polymerase-associated protein LEO1-like. (674 aa)
cdc73CDC73_C domain-containing protein. (537 aa)
TAF6Transcription initiation factor TFIID subunit 6-like. (689 aa)
GTF2A1Transcription initiation factor IIA subunit 1-like isoform X1. (359 aa)
gtf2h1General transcription factor IIH subunit 1-like. (548 aa)
ccnqCyclin-related protein FAM58A-like; Belongs to the cyclin family. (247 aa)
cinpCyclin-dependent kinase 2-interacting protein. (222 aa)
LOC108940655Uncharacterized protein. (408 aa)
TAF4BTranscription initiation factor TFIID subunit 4-like. (1169 aa)
gtf2e1General transcription factor IIE subunit 1-like. (449 aa)
Gtf2h2cC2H2-type domain-containing protein. (398 aa)
LOC108920015Transcription initiation factor TFIID subunit 9-like. (253 aa)
ENSSFOP00015014159annotation not available (1019 aa)
taf10Transcription initiation factor TFIID subunit 10-like. (191 aa)
rtf1RNA polymerase-associated protein RTF1-like. (679 aa)
taf13Transcription initiation factor TFIID subunit 13-like. (124 aa)
slc39a13Uncharacterized protein. (387 aa)
ercc2TFIIH basal transcription factor complex helicase XPD subunit-like. (760 aa)
supt5hTranscription elongation factor SPT5-like. (1084 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (263 aa)
cdk7Cyclin-dependent kinase 7-like. (353 aa)
Supt6hTranscription elongation factor SPT6-like. (1664 aa)
Taf2Transcription initiation factor TFIID subunit 2-like. (1220 aa)
Z043_113326Transcription initiation factor TFIID subunit 4-like. (1008 aa)
LOC108934435Uncharacterized protein. (1972 aa)
taf11Transcription initiation factor TFIID subunit 11-like. (205 aa)
ENSSFOP00015005678annotation not available (88 aa)
ellUncharacterized protein. (632 aa)
CCNKCyclin-K-like; Belongs to the cyclin family. (555 aa)
polr2kDNA-directed RNA polymerases I, II, and III subunit RPABC4-like. (58 aa)
mllt3Uncharacterized protein. (601 aa)
polr2gDNA-directed RNA polymerase II subunit RPB7-like. (180 aa)
LOC108934430AF4/FMR2 family member 4-like. (1149 aa)
Z043_107137FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (784 aa)
LOC108941694Perforin-1-like. (582 aa)
ELOBTranscription elongation factor B polypeptide 2-like. (177 aa)
gtf2e2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (290 aa)
tceancTranscription elongation factor A N-terminal and central domain-containing protein-like. (638 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
eloaTranscription elongation factor B polypeptide 3-like. (673 aa)
LOC108922259General transcription factor IIA, 1, 19/37kDa-like. (367 aa)
LOC108935875Transcription elongation factor A protein 3-like isoform X1. (525 aa)
wdr61WD repeat-containing protein 61-like. (305 aa)
LOC108936227AF4/FMR2 family member 1-like. (1133 aa)
Tceanc2Transcription elongation factor A N-terminal and central domain-containing protein 2-like. (282 aa)
ENSSFOP00015032353Cyclin T1. (239 aa)
CCNT2Cyclin-T2-like; Belongs to the cyclin family. (697 aa)
aff4Uncharacterized protein. (1167 aa)
paf1RNA polymerase II-associated factor 1-like. (534 aa)
gtf2h3General transcription factor IIH subunit 3-like. (301 aa)
spag16Sperm-associated antigen 16 protein-like. (642 aa)
nelfeRRM domain-containing protein. (369 aa)
ccnhCYCLIN domain-containing protein; Belongs to the cyclin family. (337 aa)
gtf2h5TFIIH basal transcription factor complex TTD-A subunit. (71 aa)
LOC108921333Protein ENL-like. (596 aa)
PRF1Uncharacterized protein. (611 aa)
LOC108929656MACPF domain-containing protein. (608 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (462 aa)
LOC108921603Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
cdk9Cyclin-dependent kinase 9-like; Belongs to the protein kinase superfamily. (393 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
LOC108932810Uncharacterized protein. (600 aa)
NelfbUncharacterized protein. (591 aa)
eaf1ELL-associated factor 1-like. (256 aa)
mnat1CDK-activating kinase assembly factor MAT1-like. (310 aa)
LOC108930646FACT complex subunit SPT16-like. (1163 aa)
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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