STRINGSTRING
tcea1 tcea1 polr2a polr2a polr2d polr2d Polr2b Polr2b ercc3 ercc3 LOC108925657 LOC108925657 xab2 xab2 COPS5 COPS5 rfc5 rfc5 polr2f polr2f rfc4 rfc4 CUL4B CUL4B ppie ppie ercc8 ercc8 pole pole Usp7 Usp7 LOC108927661 LOC108927661 Cops8 Cops8 polr2e polr2e ercc4 ercc4 LOC108939936 LOC108939936 rbx1 rbx1 rpa3 rpa3 gps1 gps1 Cul4a Cul4a prpf19 prpf19 aqr aqr ercc6 ercc6 cops3 cops3 PCNA PCNA xrcc1 xrcc1 pold2 pold2 uvssa uvssa LOC108930563 LOC108930563 uba52 uba52 gtf2h3 gtf2h3 Rps27a Rps27a LOC108942065 LOC108942065 ccnh ccnh ppp1r42 ppp1r42 gtf2h5 gtf2h5 gtf2h4 gtf2h4 EP300 EP300 polr2h polr2h pole3 pole3 Z043_107472 Z043_107472 cops7a cops7a COPS2 COPS2 lig1 lig1 mnat1 mnat1 LOC108933423 LOC108933423 phf3 phf3 rfc1 rfc1 nrde2 nrde2 LOC108926053 LOC108926053 ddb1 ddb1 gtf2h1 gtf2h1 ercc1 ercc1 LOC108920419 LOC108920419 Gtf2h2c Gtf2h2c pold1 pold1 COPS6 COPS6 rfc2 rfc2 pold3 pold3 ercc5 ercc5 ZNF830 ZNF830 usp40 usp40 ercc2 ercc2 rpa2 rpa2 cdk7 cdk7 cops4 cops4 Z043_106750 Z043_106750 rfc3 rfc3 ENSSFOP00015007539 ENSSFOP00015007539 xpa xpa ENSSFOP00015005678 ENSSFOP00015005678 lig3 lig3 polr2k polr2k polr2g polr2g isy1 isy1 Z043_109285 Z043_109285 tceanc tceanc LOC114910717 LOC114910717 Pold4 Pold4 pole4 pole4 CUL4B-2 CUL4B-2 polr2c polr2c pole2 pole2 kxd1 kxd1 ENSSFOP00015060463 ENSSFOP00015060463 polr2j polr2j LOC108933199 LOC108933199 polk polk Rcbtb2 Rcbtb2 polr2l polr2l bivm bivm Meiob Meiob Tceanc2 Tceanc2 LOC108935875 LOC108935875 polr2i polr2i
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tcea1Uncharacterized protein. (318 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1968 aa)
polr2dDNA-directed RNA polymerase II subunit RPB4-like. (144 aa)
Polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1182 aa)
ercc3TFIIH basal transcription factor complex helicase XPB subunit-like. (810 aa)
LOC108925657Transcription elongation factor A protein 2-like. (322 aa)
xab2Pre-mRNA-splicing factor SYF1-like. (856 aa)
COPS5COP9 signalosome complex subunit 5-like. (346 aa)
rfc5AAA domain-containing protein. (337 aa)
polr2fDNA-directed RNA polymerases I, II, and III subunit RPABC2-like. (127 aa)
rfc4Replication factor C subunit 4-like. (365 aa)
CUL4BCULLIN_2 domain-containing protein; Belongs to the cullin family. (991 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (343 aa)
ercc8DNA excision repair protein ERCC-8-like. (400 aa)
poleDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2291 aa)
Usp7Ubiquitin carboxyl-terminal hydrolase 7-like; Belongs to the peptidase C19 family. (1110 aa)
LOC108927661COP9 signalosome complex subunit 5-like. (365 aa)
Cops8E3 ubiquitin-protein ligase TRIM63-like. (201 aa)
polr2eDNA-directed RNA polymerases i II and III subunit rpabc1-like. (233 aa)
ercc4DNA repair endonuclease XPF-like. (909 aa)
LOC108939936E3 ubiquitin-protein ligase RBX1-like. (108 aa)
rbx1Ring-box 1. (112 aa)
rpa3Replication protein A3, 14kDa-like. (122 aa)
gps1COP9 signalosome complex subunit 1-like. (525 aa)
Cul4aCullin-4A-like; Belongs to the cullin family. (771 aa)
prpf19Uncharacterized protein. (505 aa)
aqrIntron-binding protein aquarius-like. (1463 aa)
ercc6DNA excision repair protein ERCC-6-like. (1432 aa)
cops3COP9 signalosome complex subunit 3-like. (423 aa)
PCNAProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
xrcc1DNA repair protein XRCC1-like. (612 aa)
pold2Pold2 protein-like. (501 aa)
uvssaUncharacterized protein. (713 aa)
LOC108930563C-C motif chemokine 20-like. (115 aa)
uba52Ubiquitin-large subunit ribosomal protein L40e. (128 aa)
gtf2h3General transcription factor IIH subunit 3-like. (301 aa)
Rps27aUbiquitin and ribosomal protein S27a-like protein-like. (177 aa)
LOC108942065COP9 signalosome complex subunit 2-like. (443 aa)
ccnhCYCLIN domain-containing protein; Belongs to the cyclin family. (337 aa)
ppp1r42Protein phosphatase 1 regulatory subunit 42-like. (336 aa)
gtf2h5TFIIH basal transcription factor complex TTD-A subunit. (71 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (462 aa)
EP300E1A binding protein p300. (2377 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
pole3DNA polymerase epsilon subunit 3-like. (144 aa)
Z043_107472Rbx1 protein-like. (105 aa)
cops7aCOP9 signalosome complex subunit 7a-like. (268 aa)
COPS2COP9 signalosome complex subunit 2-like. (443 aa)
lig1DNA ligase. (965 aa)
mnat1CDK-activating kinase assembly factor MAT1-like. (310 aa)
LOC108933423Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (260 aa)
phf3PHD finger protein 3-like. (1788 aa)
rfc1Replication factor C subunit 1. (1157 aa)
nrde2Thyroglobulin type-1 domain-containing protein. (1143 aa)
LOC108926053Uncharacterized protein. (2686 aa)
ddb1DNA damage-binding protein 1-like. (1138 aa)
gtf2h1General transcription factor IIH subunit 1-like. (548 aa)
ercc1DNA excision repair protein ERCC-1-like. (335 aa)
LOC108920419RCC1 and BTB domain-containing protein 1-like. (531 aa)
Gtf2h2cC2H2-type domain-containing protein. (398 aa)
pold1DNA polymerase. (1105 aa)
COPS6COP9 signalosome complex subunit 6-like. (359 aa)
rfc2Replication factor C subunit 2-like. (370 aa)
pold3DNA polymerase delta subunit 3-like. (464 aa)
ercc5DNA repair protein complementing XP-G cells-like. (1077 aa)
ZNF830Uncharacterized protein. (355 aa)
usp40Ubiquitin carboxyl-terminal hydrolase 40-like; Belongs to the peptidase C19 family. (1253 aa)
ercc2TFIIH basal transcription factor complex helicase XPD subunit-like. (760 aa)
rpa2Replication protein A 32 kDa subunit-like. (273 aa)
cdk7Cyclin-dependent kinase 7-like. (353 aa)
cops4COP9 signalosome complex subunit 4-like. (421 aa)
Z043_106750Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (645 aa)
rfc3Replication factor C (Activator 1) 3-like. (356 aa)
ENSSFOP00015007539COP9 signalosome complex subunit 7b-like. (248 aa)
xpaDNA repair protein complementing XP-A cells-like. (271 aa)
ENSSFOP00015005678annotation not available (88 aa)
lig3DNA ligase. (1008 aa)
polr2kDNA-directed RNA polymerases I, II, and III subunit RPABC4-like. (58 aa)
polr2gDNA-directed RNA polymerase II subunit RPB7-like. (180 aa)
isy1Pre-mRNA-splicing factor ISY1-like. (286 aa)
Z043_109285XRCC1_N domain-containing protein. (422 aa)
tceancTranscription elongation factor A N-terminal and central domain-containing protein-like. (638 aa)
LOC114910717Polyubiquitin-C. (381 aa)
Pold4DNA polymerase delta subunit 4-like. (124 aa)
pole4CBFD_NFYB_HMF domain-containing protein. (191 aa)
CUL4B-2Cullin-4B-like; Belongs to the cullin family. (903 aa)
polr2cDNA-directed RNA polymerase II subunit RPB3-like. (275 aa)
pole2DNA polymerase epsilon subunit 2-like. (560 aa)
kxd1KxDL motif-containing protein 1-like. (176 aa)
ENSSFOP00015060463annotation not available (874 aa)
polr2jDNA-directed RNA polymerase II subunit RPB11-a. (130 aa)
LOC108933199RCC1 and BTB domain-containing protein 1-like. (550 aa)
polkDNA polymerase kappa-like. (890 aa)
Rcbtb2RCC1 and BTB domain-containing protein 2-like. (624 aa)
polr2lUncharacterized protein. (67 aa)
bivmBasic immunoglobulin-like variable motif-containing protein. (555 aa)
MeiobUncharacterized protein. (423 aa)
Tceanc2Transcription elongation factor A N-terminal and central domain-containing protein 2-like. (282 aa)
LOC108935875Transcription elongation factor A protein 3-like isoform X1. (525 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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