STRINGSTRING
SNRPD1 SNRPD1 ybx2 ybx2 Z043_100418 Z043_100418 polr2g polr2g snrpe snrpe polr2k polr2k snrpb snrpb snrnp35 snrnp35 srsf2 srsf2 LOC108941653 LOC108941653 Z043_107307 Z043_107307 LOC108921269 LOC108921269 zcrb1 zcrb1 ENSSFOP00015016540 ENSSFOP00015016540 Zrsr2 Zrsr2 sf3b4 sf3b4 LOC108935815 LOC108935815 ybx1 ybx1 SRSF7 SRSF7 LOC108928728 LOC108928728 snrnp48 snrnp48 gtf2f2 gtf2f2 polr2e polr2e ENSSFOP00015070237 ENSSFOP00015070237 pdcd7 pdcd7 sf3b3 sf3b3 rnpc3 rnpc3 ddx23 ddx23 prpf8 prpf8 snrpd3 snrpd3 polr2h polr2h sf3b6 sf3b6 LOC108921603 LOC108921603 sf3b5 sf3b5 LOC108927242 LOC108927242 zmat5 zmat5 snrpg snrpg sf3b2 sf3b2 Snrpf Snrpf sf3b1 sf3b1 LOC108933795 LOC108933795 polr2i polr2i LOC108921560 LOC108921560 eftud2 eftud2 polr2a polr2a Z043_124132 Z043_124132 polr2d polr2d snrnp25 snrnp25 Polr2b Polr2b polr2f polr2f snrnp40 snrnp40 NCBP1 NCBP1 ENSSFOP00015047455 ENSSFOP00015047455 txnl4a txnl4a Z043_126304 Z043_126304 Z043_125251 Z043_125251 prpf6 prpf6 ddx42 ddx42 polr2c polr2c LOC108923932 LOC108923932 ENSSFOP00015061621 ENSSFOP00015061621 snrnp200 snrnp200 polr2j polr2j polr2l polr2l
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SNRPD1Small nuclear ribonucleoprotein Sm D1. (138 aa)
ybx2CSD_1 domain-containing protein. (322 aa)
Z043_100418RRM domain-containing protein. (250 aa)
polr2gDNA-directed RNA polymerase II subunit RPB7-like. (180 aa)
snrpeSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (92 aa)
polr2kDNA-directed RNA polymerases I, II, and III subunit RPABC4-like. (58 aa)
snrpbSmall nuclear ribonucleoprotein-associated protein. (237 aa)
snrnp35RRM domain-containing protein. (234 aa)
srsf2RRM domain-containing protein. (229 aa)
LOC108941653RRM domain-containing protein. (467 aa)
Z043_107307Uncharacterized protein. (252 aa)
LOC108921269Serine/arginine-rich splicing factor 1B-like. (245 aa)
zcrb1Zinc finger CCHC-type and RNA-binding motif-containing protein 1-like. (219 aa)
ENSSFOP00015016540annotation not available (97 aa)
Zrsr2Uncharacterized protein. (654 aa)
sf3b4Splicing factor 3B subunit 4-like. (403 aa)
LOC108935815Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (119 aa)
ybx1Nuclease-sensitive element-binding protein 1-like. (316 aa)
SRSF7RRM domain-containing protein. (237 aa)
LOC108928728Serine/arginine-rich splicing factor 7-like. (246 aa)
snrnp48U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like. (422 aa)
gtf2f2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (263 aa)
polr2eDNA-directed RNA polymerases i II and III subunit rpabc1-like. (233 aa)
ENSSFOP00015070237annotation not available (111 aa)
pdcd7Uncharacterized protein. (633 aa)
sf3b3Splicing factor 3B subunit 3-like. (1217 aa)
rnpc3Uncharacterized protein. (512 aa)
ddx23Putative ATP-dependent RNA helicase DDX23. (816 aa)
prpf8Pre-mRNA-processing-splicing factor 8-like. (2342 aa)
snrpd3Small nuclear ribonucleoprotein Sm D3. (127 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
sf3b6RRM domain-containing protein. (125 aa)
LOC108921603Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
sf3b5Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
LOC108927242Small nuclear ribonucleoprotein Sm D2. (118 aa)
zmat5Zinc finger matrin-type protein 5-like. (174 aa)
snrpgSmall nuclear ribonucleoprotein G. (76 aa)
sf3b2PSP domain-containing protein. (880 aa)
SnrpfSmall nuclear ribonucleoprotein F-like. (88 aa)
sf3b1Splicing factor 3B subunit 1-like. (1315 aa)
LOC108933795Uncharacterized protein. (252 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
LOC108921560Small nuclear ribonucleoprotein Sm D2. (118 aa)
eftud2116 kDa U5 small nuclear ribonucleoprotein component-like. (970 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1968 aa)
Z043_124132Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (510 aa)
polr2dDNA-directed RNA polymerase II subunit RPB4-like. (144 aa)
snrnp25U11/U12 small nuclear ribonucleoprotein 25 kDa protein-like. (199 aa)
Polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1182 aa)
polr2fDNA-directed RNA polymerases I, II, and III subunit RPABC2-like. (127 aa)
snrnp40U5 small nuclear ribonucleoprotein 40 kDa protein-like. (357 aa)
NCBP1Nuclear cap-binding protein subunit 1-like. (843 aa)
ENSSFOP00015047455annotation not available (224 aa)
txnl4aThioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
Z043_126304RRM domain-containing protein. (112 aa)
Z043_125251Chain A Of Rrm Domain In Splicing Factor Sf2-like. (111 aa)
prpf6Pre-mRNA-processing factor 6-like. (997 aa)
ddx42ATP-dependent RNA helicase DDX42-like. (910 aa)
polr2cDNA-directed RNA polymerase II subunit RPB3-like. (275 aa)
LOC108923932RRM domain-containing protein. (500 aa)
ENSSFOP00015061621annotation not available (173 aa)
snrnp200U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (2137 aa)
polr2jDNA-directed RNA polymerase II subunit RPB11-a. (130 aa)
polr2lUncharacterized protein. (67 aa)
Your Current Organism:
Scleropages formosus
NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish
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