30 items (Scleropages formosus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	polr2g	DNA-directed RNA polymerase II subunit RPB7-like. (180 aa)
	polr1e	DNA-directed RNA polymerase I subunit RPA49-like. (416 aa)
	polr2k	DNA-directed RNA polymerases I, II, and III subunit RPABC4-like. (58 aa)
	polr3b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
	polr3d	DNA-directed RNA polymerase III subunit RPC4-like. (404 aa)
	polr1d	DNA-directed RNA polymerases I and III subunit RPAC2-like. (114 aa)
	polr3h	DNA-directed RNA polymerase III subunit RPC8-like. (208 aa)
	twistnb	Uncharacterized protein. (361 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	polr3a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1390 aa)
	polr3k	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	znrd1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (118 aa)
	Polr3g	DNA-directed RNA polymerase III subunit RPC7 isoform X1. (110 aa)
	polr1a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1702 aa)
	polr1c	DNA-directed RNA polymerases I and III subunit RPAC1-like. (361 aa)
	Polr3c	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (531 aa)
	Polr3e	DNA-directed RNA polymerase III subunit RPC5-like. (687 aa)
	polr2i	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
	polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1968 aa)
	polr2d	DNA-directed RNA polymerase II subunit RPB4-like. (144 aa)
	Polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1182 aa)
	LOC108939517	DNA-directed RNA polymerase III subunit RPC4-like. (394 aa)
	polr2f	DNA-directed RNA polymerases I, II, and III subunit RPABC2-like. (127 aa)
	polr3gl	DNA-directed RNA polymerase III subunit RPC7-like. (234 aa)
	polr3f	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (312 aa)
	polr2c	DNA-directed RNA polymerase II subunit RPB3-like. (275 aa)
	polr1b	Uncharacterized protein; Belongs to the RNA polymerase beta chain family. (1218 aa)
	polr2j	DNA-directed RNA polymerase II subunit RPB11-a. (130 aa)
	polr2l	Uncharacterized protein. (67 aa)
	polr2e	DNA-directed RNA polymerases i II and III subunit rpabc1-like. (233 aa)

Your Current Organism:

Scleropages formosus

NCBI taxonomy Id: 113540
Other names: Asian arowana, Asian bonytongue, Osteoglossum formosum, S. formosus, golden arowana, golden dragon fish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108939517	Polr2b	ENSSFOP00015039250	ENSSFOP00015038365	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.890
LOC108939517	Polr3c	ENSSFOP00015039250	ENSSFOP00015034368	DNA-directed RNA polymerase III subunit RPC4-like.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.981
LOC108939517	Polr3e	ENSSFOP00015039250	ENSSFOP00015035092	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase III subunit RPC5-like.	0.976
LOC108939517	Polr3g	ENSSFOP00015039250	ENSSFOP00015026216	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase III subunit RPC7 isoform X1.	0.941
LOC108939517	polr1a	ENSSFOP00015039250	ENSSFOP00015030829	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.943
LOC108939517	polr1b	ENSSFOP00015039250	ENSSFOP00015058506	DNA-directed RNA polymerase III subunit RPC4-like.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.896
LOC108939517	polr1c	ENSSFOP00015039250	ENSSFOP00015030984	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerases I and III subunit RPAC1-like.	0.971
LOC108939517	polr1d	ENSSFOP00015039250	ENSSFOP00015017704	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerases I and III subunit RPAC2-like.	0.961
LOC108939517	polr1e	ENSSFOP00015039250	ENSSFOP00015003491	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase I subunit RPA49-like.	0.472
LOC108939517	polr2c	ENSSFOP00015039250	ENSSFOP00015056484	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase II subunit RPB3-like.	0.936
LOC108939517	polr2d	ENSSFOP00015039250	ENSSFOP00015038040	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase II subunit RPB4-like.	0.523
LOC108939517	polr2e	ENSSFOP00015039250	ENSSFOP00015078356	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerases i II and III subunit rpabc1-like.	0.963
LOC108939517	polr2f	ENSSFOP00015039250	ENSSFOP00015043354	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerases I, II, and III subunit RPABC2-like.	0.961
LOC108939517	polr2g	ENSSFOP00015039250	ENSSFOP00015001829	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase II subunit RPB7-like.	0.433
LOC108939517	polr2h	ENSSFOP00015039250	ENSSFOP00015022096	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.978
LOC108939517	polr2i	ENSSFOP00015039250	ENSSFOP00015035358	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.832
LOC108939517	polr2k	ENSSFOP00015039250	ENSSFOP00015004399	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerases I, II, and III subunit RPABC4-like.	0.964
LOC108939517	polr2l	ENSSFOP00015039250	ENSSFOP00015067546	DNA-directed RNA polymerase III subunit RPC4-like.	Uncharacterized protein.	0.964
LOC108939517	polr3a	ENSSFOP00015039250	ENSSFOP00015022458	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
LOC108939517	polr3b	ENSSFOP00015039250	ENSSFOP00015011617	DNA-directed RNA polymerase III subunit RPC4-like.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.967