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| | SCB58222.1 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. (329 aa) |
| | SCB58044.1 | Transcriptional regulator, TetR family. (224 aa) |
| | SCB58031.1 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (567 aa) |
| | rpsO | Small subunit ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | recR | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa) |
| | SCB58005.1 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (107 aa) |
| | SCB57588.1 | Transcriptional regulator, TetR family. (202 aa) |
| | SCB57886.1 | Uncharacterized conserved protein. (150 aa) |
| | rpmI | LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. (67 aa) |
| | rplT | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (134 aa) |
| | SCB57577.1 | Uncharacterized conserved protein. (134 aa) |
| | SCB57574.1 | Transcriptional regulator, TetR family. (185 aa) |
| | SCB57795.1 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. (234 aa) |
| | SCB57787.1 | Uncharacterized conserved protein. (133 aa) |
| | rpsT | SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. (92 aa) |
| | SCB57739.1 | Transcriptional regulator, TetR family. (203 aa) |
| | ihfB | Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (99 aa) |
| | hpf | Sigma 54 modulation protein /SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (191 aa) |
| | SCB57674.1 | Hypothetical protein. (117 aa) |
| | SCB57657.1 | Transcriptional regulator, TetR family. (217 aa) |
| | SCB57520.1 | Transcriptional regulator, TetR family. (193 aa) |
| | SCB57469.1 | Ethanolamine utilisation protein EutQ. (99 aa) |
| | SCB57464.1 | Transcriptional regulator, TetR family. (216 aa) |
| | SCB57443.1 | Transcriptional regulator, TetR family. (207 aa) |
| | SCB57370.1 | DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. (557 aa) |
| | SCB57281.1 | Uncharacterized conserved protein YbjQ, UPF0145 family; Belongs to the UPF0145 family. (162 aa) |
| | SCB57256.1 | Uncharacterized conserved protein. (115 aa) |
| | SCB57252.1 | ATP-dependent DNA helicase RecQ. (622 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (666 aa) |
| | rplY | LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (204 aa) |
| | clpS-2 | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (103 aa) |
| | SCB57006.1 | Uncharacterized conserved protein. (133 aa) |
| | SCB56969.1 | Transcriptional regulator, TetR family. (191 aa) |
| | clpS | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (117 aa) |
| | rpsB | SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. (255 aa) |
| | SCB56730.1 | Uncharacterized conserved protein. (124 aa) |
| | gyrA | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (910 aa) |
| | parE | Topoisomerase-4 subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (690 aa) |
| | SCB56216.1 | Uncharacterized conserved protein. (133 aa) |
| | rpsD | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (205 aa) |
| | SCB56430.1 | Uncharacterized conserved protein. (132 aa) |
| | SCB56394.1 | Circadian clock protein KaiC. (503 aa) |
| | SCB56272.1 | Uncharacterized conserved protein, DUF924 family. (183 aa) |
| | SCB58238.1 | Transcriptional regulator, TetR family. (212 aa) |
| | rpsU | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. (77 aa) |
| | SCB58358.1 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. (349 aa) |
| | SCB58643.1 | Transcriptional regulator, TetR family. (203 aa) |
| | SCB58785.1 | Glutathione-dependent formaldehyde-activating enzyme. (138 aa) |
| | SCB58808.1 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. (324 aa) |
| | SCB58844.1 | Transcriptional regulator, TetR family. (212 aa) |
| | SCB58539.1 | Putative SOS response-associated peptidase YedK. (164 aa) |
| | SCB58540.1 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. (195 aa) |
| | SCB59136.1 | DNA topoisomerase-1. (334 aa) |
| | SCB59223.1 | Transcriptional regulator, TetR family. (207 aa) |
| | SCB58997.1 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. (331 aa) |
| | SCB59011.1 | Transcriptional regulator, TetR family. (224 aa) |
| | SCB59051.1 | Uncharacterized conserved protein. (103 aa) |
| | rpmE | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (73 aa) |
| | SCB59426.1 | Transcriptional regulator, TetR family. (192 aa) |
| | rpmJ | Large subunit ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (41 aa) |
| | SCB59524.1 | Transcriptional regulator, TetR family. (219 aa) |
| | rpsU-2 | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. (70 aa) |
| | SCB59583.1 | Transcriptional regulator, TetR family. (226 aa) |
| | SCB59603.1 | Transcriptional regulator, TetR family. (192 aa) |
| | SCB59620.1 | Transcriptional regulator, TetR family. (202 aa) |
| | SCB59323.1 | Transcriptional regulator, TetR family. (200 aa) |
| | smc | Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1153 aa) |
| | SCB59899.1 | Transcriptional regulator, TetR family. (204 aa) |
| | SCB59673.1 | Uncharacterized conserved protein. (166 aa) |
| | SCB59942.1 | Transcriptional regulator, TetR family. (215 aa) |
| | SCB59945.1 | Transcriptional regulator, TetR family. (217 aa) |
| | SCB59685.1 | Transcriptional regulator, TetR family. (213 aa) |
| | parC | DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (751 aa) |
| | SCB60106.1 | Transcriptional regulator, TetR family. (210 aa) |
| | SCB60141.1 | DNA polymerase III, chi subunit. (149 aa) |
| | rpsF | Small subunit ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (152 aa) |
| | topA | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (884 aa) |
| | rpsR | SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (82 aa) |
| | rplI | LSU ribosomal protein L9P; Binds to the 23S rRNA. (192 aa) |
| | SCB60162.1 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (536 aa) |
| | SCB60174.1 | Uncharacterized conserved protein. (158 aa) |
| | SCB60175.1 | Uncharacterized conserved protein. (160 aa) |
| | SCB60176.1 | Uncharacterized conserved protein. (158 aa) |
| | SCB60186.1 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. (254 aa) |
| | rpmG | LSU ribosomal protein L33P /LSU ribosomal protein MRPL33P; Belongs to the bacterial ribosomal protein bL33 family. (55 aa) |
| | SCB60007.1 | NADH-quinone oxidoreductase subunit E. (227 aa) |
| | SCB60009.1 | NADH dehydrogenase subunit E. (387 aa) |
| | rplM | LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (154 aa) |
| | rpsI | Small subunit ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (155 aa) |
| | priA | Replication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (738 aa) |
| | rpmB | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. (98 aa) |
| | rpmF | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. (61 aa) |
| | rplS | LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (178 aa) |
| | rimM | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (188 aa) |
| | rpsP | SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. (123 aa) |
| | SCB60578.1 | Transcriptional regulator, TetR family. (216 aa) |
| | SCB60611.1 | Transcriptional regulator, TetR family. (187 aa) |
| | SCB60720.1 | Transcriptional regulator, TetR family. (185 aa) |
| | SCB60908.1 | Transcriptional regulator, TetR family. (225 aa) |
| | betI | Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes. (206 aa) |
| | rpsU-3 | SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. (78 aa) |
| | SCB60937.1 | Transcriptional regulator, TetR family. (197 aa) |
| | SCB61190.1 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. (333 aa) |
| | SCB61108.1 | Transcriptional regulator, TetR family. (210 aa) |
| | SCB61304.1 | IstB-like ATP binding protein. (111 aa) |
| | SCB61310.1 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. (341 aa) |
| | SCB61216.1 | PELOTA RNA binding domain-containing protein. (366 aa) |
| | SCB61252.1 | DNA replication protein DnaC. (244 aa) |
| | rplU | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (105 aa) |
| | rpmA | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. (89 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (811 aa) |
| | SCB61477.1 | Chromosome partitioning protein, ParB family; Belongs to the ParB family. (293 aa) |
| | SCB61611.1 | Toprim domain-containing protein. (343 aa) |
| | SCB61724.1 | Putative SOS response-associated peptidase YedK; Belongs to the SOS response-associated peptidase family. (235 aa) |
| | SCB61765.1 | Transcriptional regulator, TetR family. (215 aa) |
| | gfa | S-(hydroxymethyl)glutathione synthase; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family. (190 aa) |
| | SCB61853.1 | Transcriptional regulator, TetR family. (201 aa) |
| | SCB61867.1 | ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (192 aa) |
| | SCB61990.1 | Recombination protein MgsA. (438 aa) |
| | rplQ | LSU ribosomal protein L17P. (140 aa) |
| | rpsK | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rpsM | SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (122 aa) |
| | rplO | LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (158 aa) |
| | rpmD | LSU ribosomal protein L30P. (69 aa) |
| | rpsE | SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (189 aa) |
| | rplR | LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (120 aa) |
| | rplF | LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa) |
| | rpsH | SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rpsN | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa) |
| | rplE | LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (185 aa) |
| | rplX | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (102 aa) |
| | rplN | LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsQ | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (79 aa) |
| | rpmC | LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. (66 aa) |
| | rplP | LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (137 aa) |
| | rpsC | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (244 aa) |
| | rplV | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (129 aa) |
| | rpsS | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplB | LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (278 aa) |
| | rplW | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (97 aa) |
| | rplD | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (206 aa) |
| | rplC | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (213 aa) |
| | rpsJ | SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | recO | DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (256 aa) |
| | SCB62169.1 | IstB-like ATP binding protein. (135 aa) |
| | queE | preQ(0) biosynthesis protein QueE; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. (242 aa) |
| | rpsL | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (123 aa) |
| | rpsG | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rplK | LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (143 aa) |
| | rplA | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (233 aa) |
| | rplJ | LSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (172 aa) |
| | rplL | LSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (126 aa) |
| | SCB62245.1 | SOS response associated peptidase (SRAP); Belongs to the SOS response-associated peptidase family. (92 aa) |
| | SCB62282.1 | Hypothetical protein. (517 aa) |
| | SCB62305.1 | SOS response associated peptidase (SRAP); Belongs to the SOS response-associated peptidase family. (154 aa) |
| | SCB62346.1 | Transcriptional regulator, TetR family. (234 aa) |
