Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ccmL | ccmM | Synpcc7942_1422 | Synpcc7942_1423 | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.982 |
| ccmL | ccmO | Synpcc7942_1422 | Synpcc7942_1425 | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.996 |
| ccmL | ndhF3 | Synpcc7942_1422 | Synpcc7942_2091 | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.508 |
| ccmM | ccmL | Synpcc7942_1423 | Synpcc7942_1422 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | 0.982 |
| ccmM | ccmO | Synpcc7942_1423 | Synpcc7942_1425 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.964 |
| ccmM | cmpA | Synpcc7942_1423 | Synpcc7942_1488 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | Membrane protein; Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity. Belongs to the CmpA/NrtA family. | 0.563 |
| ccmM | cmpR | Synpcc7942_1423 | Synpcc7942_1310 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | ndhF3 operon transcriptional regulator; Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions; Belongs to the LysR transcriptional regulatory family. | 0.544 |
| ccmM | ndhF3 | Synpcc7942_1423 | Synpcc7942_2091 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.700 |
| ccmM | ndhF4 | Synpcc7942_1423 | Synpcc7942_0309 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.698 |
| ccmO | ccmL | Synpcc7942_1425 | Synpcc7942_1422 | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | 0.996 |
| ccmO | ccmM | Synpcc7942_1425 | Synpcc7942_1423 | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.964 |
| ccmO | cmpA | Synpcc7942_1425 | Synpcc7942_1488 | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | Membrane protein; Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity. Belongs to the CmpA/NrtA family. | 0.430 |
| ccmO | ndhF3 | Synpcc7942_1425 | Synpcc7942_2091 | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.547 |
| cmpA | ccmM | Synpcc7942_1488 | Synpcc7942_1423 | Membrane protein; Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity. Belongs to the CmpA/NrtA family. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.563 |
| cmpA | ccmO | Synpcc7942_1488 | Synpcc7942_1425 | Membrane protein; Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity. Belongs to the CmpA/NrtA family. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.430 |
| cmpA | cmpR | Synpcc7942_1488 | Synpcc7942_1310 | Membrane protein; Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity. Belongs to the CmpA/NrtA family. | ndhF3 operon transcriptional regulator; Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions; Belongs to the LysR transcriptional regulatory family. | 0.673 |
| cmpA | ndhB | Synpcc7942_1488 | Synpcc7942_1415 | Membrane protein; Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity. Belongs to the CmpA/NrtA family. | Proton-translocating NADH-quinone oxidoreductase, chain N; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. | 0.526 |
| cmpA | ndhF3 | Synpcc7942_1488 | Synpcc7942_2091 | Membrane protein; Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity. Belongs to the CmpA/NrtA family. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.561 |
| cmpR | ccmM | Synpcc7942_1310 | Synpcc7942_1423 | ndhF3 operon transcriptional regulator; Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions; Belongs to the LysR transcriptional regulatory family. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.544 |
| cmpR | cmpA | Synpcc7942_1310 | Synpcc7942_1488 | ndhF3 operon transcriptional regulator; Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions; Belongs to the LysR transcriptional regulatory family. | Membrane protein; Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Binds bicarbonate with high affinity. Belongs to the CmpA/NrtA family. | 0.673 |
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