Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ccmL | ccmM | Synpcc7942_1422 | Synpcc7942_1423 | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.982 |
| ccmL | ccmO | Synpcc7942_1422 | Synpcc7942_1425 | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.996 |
| ccmL | ndhF3 | Synpcc7942_1422 | Synpcc7942_2091 | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.508 |
| ccmM | ccmL | Synpcc7942_1423 | Synpcc7942_1422 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | 0.982 |
| ccmM | ccmO | Synpcc7942_1423 | Synpcc7942_1425 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.964 |
| ccmM | chpX | Synpcc7942_1423 | Synpcc7942_0308 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | CO2 hydration protein. | 0.896 |
| ccmM | ndhF3 | Synpcc7942_1423 | Synpcc7942_2091 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.700 |
| ccmM | ndhF4 | Synpcc7942_1423 | Synpcc7942_0309 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.698 |
| ccmM | nrtA | Synpcc7942_1423 | Synpcc7942_1239 | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | ABC-type nitrate/nitrite transport system substrate-binding protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport. NrtA is the substrate-binding protein. Binds both nitrate and nitrite with high affinity. Belongs to the CmpA/NrtA family. | 0.430 |
| ccmO | ccmL | Synpcc7942_1425 | Synpcc7942_1422 | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | 0.996 |
| ccmO | ccmM | Synpcc7942_1425 | Synpcc7942_1423 | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.964 |
| ccmO | ndhF3 | Synpcc7942_1425 | Synpcc7942_2091 | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.547 |
| chpX | ccmM | Synpcc7942_0308 | Synpcc7942_1423 | CO2 hydration protein. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.896 |
| chpX | ndhF3 | Synpcc7942_0308 | Synpcc7942_2091 | CO2 hydration protein. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.832 |
| chpX | ndhF4 | Synpcc7942_0308 | Synpcc7942_0309 | CO2 hydration protein. | NAD(P)H dehydrogenase, subunit NdhF3 family. | 0.998 |
| cpmA | nrtA | Synpcc7942_1168 | Synpcc7942_1239 | Circadian phase modifier CpmA. | ABC-type nitrate/nitrite transport system substrate-binding protein; Part of the ABC transporter complex NrtABCD involved in nitrate uptake. The complex is probably also involved in nitrite transport. NrtA is the substrate-binding protein. Binds both nitrate and nitrite with high affinity. Belongs to the CmpA/NrtA family. | 0.523 |
| ndhF3 | ccmL | Synpcc7942_2091 | Synpcc7942_1422 | NAD(P)H dehydrogenase, subunit NdhF3 family. | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | 0.508 |
| ndhF3 | ccmM | Synpcc7942_2091 | Synpcc7942_1423 | NAD(P)H dehydrogenase, subunit NdhF3 family. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.700 |
| ndhF3 | ccmO | Synpcc7942_2091 | Synpcc7942_1425 | NAD(P)H dehydrogenase, subunit NdhF3 family. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.547 |
| ndhF3 | chpX | Synpcc7942_2091 | Synpcc7942_0308 | NAD(P)H dehydrogenase, subunit NdhF3 family. | CO2 hydration protein. | 0.832 |
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