Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SEN0012 | SEN0013 | Synpcc7942_1835 | Synpcc7942_1834 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.942 |
| SEN0012 | SEN0014 | Synpcc7942_1835 | Synpcc7942_1833 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.821 |
| SEN0013 | SEN0012 | Synpcc7942_1834 | Synpcc7942_1835 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.942 |
| SEN0013 | SEN0014 | Synpcc7942_1834 | Synpcc7942_1833 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.922 |
| SEN0013 | ccmL | Synpcc7942_1834 | Synpcc7942_1422 | Conserved hypothetical protein. | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | 0.523 |
| SEN0013 | ccmO | Synpcc7942_1834 | Synpcc7942_1425 | Conserved hypothetical protein. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.525 |
| SEN0014 | SEN0012 | Synpcc7942_1833 | Synpcc7942_1835 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.821 |
| SEN0014 | SEN0013 | Synpcc7942_1833 | Synpcc7942_1834 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.922 |
| SEN0014 | ccmL | Synpcc7942_1833 | Synpcc7942_1422 | Conserved hypothetical protein. | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | 0.449 |
| SEN0014 | ccmM | Synpcc7942_1833 | Synpcc7942_1423 | Conserved hypothetical protein. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.535 |
| SEN0014 | ccmO | Synpcc7942_1833 | Synpcc7942_1425 | Conserved hypothetical protein. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.524 |
| SEN0014 | ftsZ | Synpcc7942_1833 | Synpcc7942_2378 | Conserved hypothetical protein. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.620 |
| cbbL | ccmL | Synpcc7942_1426 | Synpcc7942_1422 | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | 0.889 |
| cbbL | ccmM | Synpcc7942_1426 | Synpcc7942_1423 | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.999 |
| cbbL | ccmO | Synpcc7942_1426 | Synpcc7942_1425 | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Carbon dioxide concentrating mechanism protein CcmO; May be involved in the formation of the carboxysome, a polyhedral inclusion where RuBisCO is sequestered; Belongs to the bacterial microcompartments protein family. | 0.900 |
| cbbL | ftsZ | Synpcc7942_1426 | Synpcc7942_2378 | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.612 |
| ccmL | SEN0013 | Synpcc7942_1422 | Synpcc7942_1834 | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | Conserved hypothetical protein. | 0.523 |
| ccmL | SEN0014 | Synpcc7942_1422 | Synpcc7942_1833 | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | Conserved hypothetical protein. | 0.449 |
| ccmL | cbbL | Synpcc7942_1422 | Synpcc7942_1426 | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.889 |
| ccmL | ccmM | Synpcc7942_1422 | Synpcc7942_1423 | Carbon dioxide concentrating mechanism protein CcmL; To E.coli and S.typhimurium CchB. | Carbonate dehydratase; The presence of two potential DNA-binding regions suggests this protein may be a transcriptional regulator. | 0.982 |
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