Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABB56422.1 | ABB56870.1 | Synpcc7942_0390 | Synpcc7942_0839 | Chromate transporter. | Nitrilase. | 0.705 |
| ABB56422.1 | ABB57805.1 | Synpcc7942_0390 | Synpcc7942_1775 | Chromate transporter. | Phosphate starvation-induced protein. | 0.801 |
| ABB56422.1 | sphX | Synpcc7942_0390 | Synpcc7942_2445 | Chromate transporter. | Phosphate binding protein; May be involved in the system for phosphate transport across the cytoplasmic membrane. | 0.524 |
| ABB56870.1 | ABB56422.1 | Synpcc7942_0839 | Synpcc7942_0390 | Nitrilase. | Chromate transporter. | 0.705 |
| ABB56870.1 | ABB57805.1 | Synpcc7942_0839 | Synpcc7942_1775 | Nitrilase. | Phosphate starvation-induced protein. | 0.792 |
| ABB56870.1 | sphX | Synpcc7942_0839 | Synpcc7942_2445 | Nitrilase. | Phosphate binding protein; May be involved in the system for phosphate transport across the cytoplasmic membrane. | 0.495 |
| ABB57805.1 | ABB56422.1 | Synpcc7942_1775 | Synpcc7942_0390 | Phosphate starvation-induced protein. | Chromate transporter. | 0.801 |
| ABB57805.1 | ABB56870.1 | Synpcc7942_1775 | Synpcc7942_0839 | Phosphate starvation-induced protein. | Nitrilase. | 0.792 |
| ABB57805.1 | dnaN | Synpcc7942_1775 | Synpcc7942_0001 | Phosphate starvation-induced protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.403 |
| ABB57805.1 | rpmB | Synpcc7942_1775 | Synpcc7942_0042 | Phosphate starvation-induced protein. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.438 |
| ABB57805.1 | sphX | Synpcc7942_1775 | Synpcc7942_2445 | Phosphate starvation-induced protein. | Phosphate binding protein; May be involved in the system for phosphate transport across the cytoplasmic membrane. | 0.587 |
| atpA | cbbL | Synpcc7942_0336 | Synpcc7942_1426 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | 0.452 |
| atpA | chlN | Synpcc7942_0336 | Synpcc7942_1420 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex. | 0.501 |
| atpA | hemC | Synpcc7942_0336 | Synpcc7942_0967 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. | 0.462 |
| atpA | ndhA | Synpcc7942_0336 | Synpcc7942_1343 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | NADH dehydrogenase subunit 1; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. | 0.477 |
| atpA | rpmB | Synpcc7942_0336 | Synpcc7942_0042 | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.561 |
| cbbL | atpA | Synpcc7942_1426 | Synpcc7942_0336 | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.452 |
| cbbL | chlB | Synpcc7942_1426 | Synpcc7942_1838 | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Light-independent protochlorophyllide reductase, B subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex. | 0.460 |
| cbbL | chlN | Synpcc7942_1426 | Synpcc7942_1420 | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Light-independent protochlorophyllide reductase, N subunit; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (ChlN-ChlB) is the catalytic component of the complex. | 0.517 |
| cbbL | cpcA1 | Synpcc7942_1426 | Synpcc7942_1048 | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. | Phycocyanin, alpha subunit; Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex. | 0.474 |
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