STRINGSTRING
dnaA dnaA ntrY ntrY fixL1 fixL1 walK walK atoE atoE cheB2 cheB2 cheR cheR glnG2 glnG2 glnA glnA degP degP zraR1 zraR1 bphB bphB AFE03812.1 AFE03812.1 rpoN rpoN nla19 nla19 mnaA mnaA frgC frgC frgB frgB nla28 nla28 sasR sasR lytS lytS sphR sphR phoD phoD phoR3 phoR3 yhcK yhcK divK divK fadA fadA yeiL yeiL AFE04417.1 AFE04417.1 resE1 resE1 yfhA1 yfhA1 fadA1 fadA1 pleD1 pleD1 adrA adrA atoS atoS crdA crdA AFE04610.1 AFE04610.1 cheA3 cheA3 cheB3 cheB3 cheR4 cheR4 mrpC mrpC mrpB mrpB mrpA mrpA hnr hnr pstS pstS phoB phoB AFE04744.1 AFE04744.1 phoR1 phoR1 phoP1 phoP1 cheY1 cheY1 cheA cheA cheW3 cheW3 cheW cheW cheR1 cheR1 cheB cheB cheY cheY AFE04799.1 AFE04799.1 AFE04903.1 AFE04903.1 actA actA actB actB wza wza zraS4 zraS4 spaB spaB spaC spaC pleD2 pleD2 pilA1 pilA1 htrA htrA zraS5 zraS5 degP1 degP1 zraR3 zraR3 zraS6 zraS6 zraR4 zraR4 AFE05330.1 AFE05330.1 glsA2 glsA2 spaB1 spaB1 spaC1 spaC1 des des tolC tolC frzA frzA frzE frzE frzG frzG frzF frzF degS degS degP2 degP2 nla6 nla6 degP3 degP3 nifA nifA glsA glsA mdtA2 mdtA2 pcaF pcaF AFE05696.1 AFE05696.1 pleD3 pleD3 regX3 regX3 baeS baeS atoC7 atoC7 AFE05979.1 AFE05979.1 cheA1 cheA1 cheW5 cheW5 tap tap cheB1 cheB1 cheR7 cheR7 degP4 degP4 zraR6 zraR6 spaB2 spaB2 AFE06266.1 AFE06266.1 frzCD1 frzCD1 AFE06320.1 AFE06320.1 cheW4 cheW4 cheY4 cheY4 cheR5 cheR5 cheR6 cheR6 cheB6 cheB6 cheR2 cheR2 cheW2 cheW2 trg1 trg1 cheA2 cheA2 zraR7 zraR7 fliA fliA AFE06517.1 AFE06517.1 crp2 crp2 lytS3 lytS3 kinE1 kinE1 htrA1 htrA1 glnA1 glnA1 atoC9 atoC9 pilA pilA pilR pilR pilS pilS zraR9 zraR9 xylR1 xylR1 cheY2 cheY2 zraS7 zraS7 cheB7 cheB7 frzE2 frzE2 frzF1 frzF1 gtcR gtcR yfhA4 yfhA4 celA celA AFE07088.1 AFE07088.1 wza1 wza1 epsB epsB arcB5 arcB5 AFE07246.1 AFE07246.1 ddpX ddpX atoS8 atoS8 atoC11 atoC11 difE difE difD difD difC difC difA difA AFE07510.1 AFE07510.1 natB natB natA natA cydB cydB cydA cydA cheW7 cheW7 frzF2 frzF2 cheW8 cheW8 tsr2 tsr2 frzE3 frzE3 cheB4 cheB4 dctA dctA atoC12 atoC12 cheB5 cheB5 cheR3 cheR3 mcp4 mcp4 cheW6 cheW6 cheA5 cheA5 cheY3 cheY3 regB1 regB1 actR actR phoR5 phoR5 degU2 degU2 htrA2 htrA2 luxQ5 luxQ5 tolC1 tolC1 algB algB kinB4 kinB4 kdpD kdpD kdpC kdpC kdpB kdpB kdpA kdpA AFE07792.1 AFE07792.1 pilS1 pilS1 sphR1 sphR1
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dnaAChromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (452 aa)
ntrYPutative sensory box histidine kinase. (469 aa)
fixL1Sensor protein. (464 aa)
walKSensory box histidine kinase. (647 aa)
atoEShort-chain fatty acid transporter. (448 aa)
cheB2CheB methylesterase. (349 aa)
cheRCheR methyltransferase SAM-binding domain-containing protein. (644 aa)
glnG2Fis family sigma-54 dependent transcriptional regulator. (576 aa)
glnAGlutamate--ammonia ligase. (479 aa)
degPProtease DO family protein; Belongs to the peptidase S1C family. (504 aa)
zraR1Sigma-54 dependent DNA-binding response regulator. (470 aa)
bphBSensor protein. (756 aa)
AFE03812.1Hypothetical protein. (150 aa)
rpoNRNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (506 aa)
nla19Sigma-54 dependent DNA-binding response regulator. (484 aa)
mnaAUDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (380 aa)
frgCSigma-54 dependent DNA-binding response regulator. (463 aa)
frgBSensor histidine kinase. (510 aa)
nla28Sigma-54 dependent DNA-binding response regulator. (453 aa)
sasRSigma-54 dependent DNA-binding response regulator. (469 aa)
lytSHistidine kinase family protein. (352 aa)
sphRDNA-binding response regulator. (237 aa)
phoDAlkaline phosphatase. (739 aa)
phoR3Sensor histidine kinase. (614 aa)
yhcKFHA domain/GGDEF domain-containing protein. (293 aa)
divKResponse regulator. (136 aa)
fadAacetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (411 aa)
yeiLCyclic nucleotide-binding domain-containing protein. (148 aa)
AFE04417.1Cyclic nucleotide-binding domain-containing protein. (152 aa)
resE1Sensor protein. (498 aa)
yfhA1RNA polymerase sigma factor 54. (475 aa)
fadA1acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (403 aa)
pleD1Response regulator/GGDEF domain-containing protein. (316 aa)
adrAFHA/GGDEF domain-containing protein. (303 aa)
atoSSensor histidine kinase. (549 aa)
crdASigma-54 dependent DNA-binding response regulator. (486 aa)
AFE04610.1Chemotaxis coupling protein CheW. (144 aa)
cheA3Sensor histidine kinase/response regulator. (920 aa)
cheB3Protein-glutamate methylesterase CheB3; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (352 aa)
cheR4Chemotaxis protein methyltransferase CheR. (396 aa)
mrpCTranscriptional regulator MrpC. (248 aa)
mrpBSigma-54 dependent DNA-binding response regulator. (488 aa)
mrpASensor histidine kinase. (328 aa)
hnrResponse regulator/GGDEF/GAF domain-containing protein. (616 aa)
pstSPhosphate ABC transporter periplasmic phosphate-binding protein. (274 aa)
phoBPhosphate regulon transcriptional regulatory protein PhoB. (237 aa)
AFE04744.1Hypothetical protein. (531 aa)
phoR1Sensory box histidine kinase. (453 aa)
phoP1DNA-binding response regulator PhoP1. (226 aa)
cheY1Chemotaxis protein CheY. (124 aa)
cheACheW-like protein. (749 aa)
cheW3Putative chemotaxis protein CheW. (196 aa)
cheWChemotaxis protein CheA. (175 aa)
cheR1Chemotaxis protein methyltransferase CheR; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (290 aa)
cheBProtein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (347 aa)
cheYChemotaxis protein CheY. (127 aa)
AFE04799.1HAE1 family efflux transporter outer membrane efflux protein. (426 aa)
AFE04903.1Hypothetical protein. (324 aa)
actAC-signal regulator ActA. (317 aa)
actBSigma-54 activator protein ActB. (561 aa)
wzaPolysaccharide biosynthesis/export protein. (189 aa)
zraS4Sensor histidine kinase. (747 aa)
spaBLanthionine biosynthesis protein LanB. (1086 aa)
spaCLanthionine biosynthesis cyclase LanC. (455 aa)
pleD2Response regulator/GGDEF domain-containing protein. (462 aa)
pilA1Putative fimbrial protein. (200 aa)
htrAS1C family peptidase. (446 aa)
zraS5Periplasmic sensor signal transduction histidine kinase. (467 aa)
degP1Periplasmic serine protease. (511 aa)
zraR3Sigma-54 dependent DNA-binding response regulator. (457 aa)
zraS6Sensor protein. (705 aa)
zraR4Sigma-54 dependent DNA-binding response regulator. (454 aa)
AFE05330.1Hypothetical protein. (136 aa)
glsA2Glutaminase; Belongs to the glutaminase family. (333 aa)
spaB1Lanthionine biosynthesis protein LanB. (1089 aa)
spaC1Subtilin biosynthesis protein spaC. (437 aa)
desFatty acid desaturase. (335 aa)
tolCOuter membrane efflux protein. (441 aa)
frzAFrizzy aggregation protein A. (173 aa)
frzEGliding motility regulatory protein. (770 aa)
frzGProtein-glutatmate methylesterase FrzG; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (342 aa)
frzFProtein methyltransferase FrzF. (592 aa)
degSSensor histidine kinase. (427 aa)
degP2Putative lipoprotein. (296 aa)
nla6Sigma-54 dependent DNA-binding response regulator. (479 aa)
degP3S1C family peptidase. (449 aa)
nifASigma-54 dependent transcription regulator. (507 aa)
glsAGlutaminase; Belongs to the glutaminase family. (303 aa)
mdtA2RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (395 aa)
pcaFacetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (393 aa)
AFE05696.1Cyclic nucleotide-binding domain-containing protein. (156 aa)
pleD3Response regulator. (319 aa)
regX3DNA-binding response regulator. (224 aa)
baeSSensor histidine kinase. (500 aa)
atoC7Sigma-54 dependent DNA-binding response regulator. (474 aa)
AFE05979.1D-alanyl-D-alanine carboxypeptidase family protein. (181 aa)
cheA1Chemotaxis protein CheA. (722 aa)
cheW5Chemotaxis protein CheA. (162 aa)
tapPutative methyl-accepting chemotaxis protein. (700 aa)
cheB1Chemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (354 aa)
cheR7Chemotaxis protein methyltransferase 1. (296 aa)
degP4S1C family peptidase. (499 aa)
zraR6Sigma-54 dependent transcription regulator. (597 aa)
spaB2Lanthionine biosynthesis protein LanB. (1077 aa)
AFE06266.1Lanthionine synthetase C family protein. (421 aa)
frzCD1Methyl accepting chemotaxis protein. (516 aa)
AFE06320.1Cyclic nucleotide-binding domain-containing protein. (216 aa)
cheW4Chemotaxis protein CheW. (193 aa)
cheY4Response regulator. (137 aa)
cheR5Chemotaxis protein methyltransferase CheR. (500 aa)
cheR6CheR family methyltransferase. (275 aa)
cheB6CheB methylesterase. (203 aa)
cheR2MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (298 aa)
cheW2CheW protein. (188 aa)
trg1Methyl-accepting chemotaxis sensory transducer. (562 aa)
cheA2Chemotaxis protein CheA. (572 aa)
zraR7Sigma-54 dependent DNA-binding response regulator. (468 aa)
fliAFliA/WhiG family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. (279 aa)
AFE06517.1HtrA protease/chaperone protein. (337 aa)
crp2Catabolite gene activator. (226 aa)
lytS3Sensor protein. (345 aa)
kinE1Sensor histidine kinase. (449 aa)
htrA1S1C family peptidase. (411 aa)
glnA1Glutamine synthetase family protein. (487 aa)
atoC9Sigma-54 dependent DNA-binding response regulator. (470 aa)
pilAPilin. (209 aa)
pilRPilin regulatory protein PilR. (477 aa)
pilSPilin regulatory protein PilS. (522 aa)
zraR9Sigma-54 dependent DNA-binding response regulator. (461 aa)
xylR1Sigma-54 dependent transcription regulator. (546 aa)
cheY2Response regulator. (124 aa)
zraS7Sensor histidine kinase. (534 aa)
cheB7Putative protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (355 aa)
frzE2Chemotaxis sensor histidine kinase/response regulator. (725 aa)
frzF1Putative chemotaxis protein methyltransferase CheR. (410 aa)
gtcRPutative chemotaxis protein CheY. (125 aa)
yfhA4Response regulator. (160 aa)
celAEndoglucanase; Belongs to the glycosyl hydrolase family 6. (482 aa)
AFE07088.1Acetyl-CoA Acetyltransferase. (500 aa)
wza1Polysaccharide export lipoprotein Wza. (373 aa)
epsBPutative tyrosine-protein kinase epsB. (734 aa)
arcB5Sensor histidine kinase/response regulator. (677 aa)
AFE07246.1MCP methyltransferase, CheR-type. (343 aa)
ddpXD-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (209 aa)
atoS8Sensor histidine kinase. (400 aa)
atoC11Sigma-54 dependent DNA-binding response regulator. (451 aa)
difEHistidine kinase DifE. (789 aa)
difDFibril biogenesis regulator DifD. (122 aa)
difCFibril biogenesis regulator DifC. (140 aa)
difAMethyl accepting chemotaxis protein. (457 aa)
AFE07510.1Hypothetical protein. (467 aa)
natBPutative sodium ABC transporter permease. (390 aa)
natASodium ABC transporter ATP-binding protein NatA. (244 aa)
cydBCytochrome d ubiquinol oxidase subunit II. (343 aa)
cydACytochrome d ubiquinol oxidase subunit I. (448 aa)
cheW7Putative chemotaxis protein, CheW. (161 aa)
frzF2Putative chemotaxis protein methyltransferase CheR. (597 aa)
cheW8Putative chemotaxis protein CheW. (204 aa)
tsr2Methyl accepting chemotaxis protein. (547 aa)
frzE3Sensor histidine kinase/response regulator. (720 aa)
cheB4Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (355 aa)
dctASodium:dicarboxylate symporter family protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (438 aa)
atoC12Sigma-54 dependent DNA-binding response regulator. (462 aa)
cheB5Protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (343 aa)
cheR3Chemotaxis protein methyltransferase CheR. (273 aa)
mcp4Methyl accepting chemotaxis protein. (847 aa)
cheW6Putative chemotaxis protein CheW. (148 aa)
cheA5Putative chemotaxis protein CheA. (692 aa)
cheY3Putative chemotaxis protein CheY. (130 aa)
regB1Sensor histidine kinase. (435 aa)
actRFis family DNA-binding response regulator. (185 aa)
phoR5Sensor histidine kinase. (818 aa)
degU2LuxR family DNA-binding response regulator. (209 aa)
htrA2S1C family peptidase. (304 aa)
luxQ5Sensor histidine kinase/response regulator. (510 aa)
tolC1Outer membrane efflux protein; CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin). Belongs to the outer membrane factor (OMF) (TC 1.B.17) family. (479 aa)
algBSigma-54 dependent DNA-binding response regulator. (445 aa)
kinB4Sensory box histidine kinase. (611 aa)
kdpDOsmosensitive K+ channel histidine kinase sensor subunit. (387 aa)
kdpCK+-transporting ATPase subunit C; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex. (199 aa)
kdpBK+-transporting ATPase subunit B; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. (686 aa)
kdpAPotassium-transporting ATPase subunit A; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane. (565 aa)
AFE07792.1Response regulator. (161 aa)
pilS1ATPase domain-containing protein. (451 aa)
sphR1Response regulator. (135 aa)
Your Current Organism:
Corallococcus coralloides
NCBI taxonomy Id: 1144275
Other names: C. coralloides DSM 2259, Corallococcus coralloides ATCC 25202, Corallococcus coralloides DSM 2259, Corallococcus coralloides NBRC 100086, Corallococcus coralloides str. DSM 2259, Corallococcus coralloides strain DSM 2259
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