(8 nodes) Mixed, incl. TOBE domain, and ABC-type carbohydrate transporter activity network (Rhizobium sp. CF080)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EUB96660.1	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: lacK1, Lactose transport ATP-binding protein LacK; SMART: AAA ATPase. (364 aa)
	EUB96662.1	Hypothetical protein; KEGG: ABC transporter substrate-binding protein. (423 aa)
	EUB96663.1	PFAM: ABC-type transporter, integral membrane subunit; KEGG: permease component of ABC-type sugar transporter. (310 aa)
	EUB96664.1	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease. (278 aa)
	EUB99581.1	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease. (289 aa)
	EUB99582.1	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter, permease. (277 aa)
	EUB99583.1	PFAM: extracellular solute-binding protein family 1; KEGG: extracellular solute-binding protein. (431 aa)
	EUB99585.1	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: sugar ABC transporter ATPase; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (353 aa)

Your Current Organism:

Rhizobium sp. CF080

NCBI taxonomy Id: 1144310
Other names: R. sp. CF080

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EUB96660.1	EUB96662.1	PMI07_001559	PMI07_001561	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: lacK1, Lactose transport ATP-binding protein LacK; SMART: AAA ATPase.	Hypothetical protein; KEGG: ABC transporter substrate-binding protein.	0.733
EUB96660.1	EUB96663.1	PMI07_001559	PMI07_001562	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: lacK1, Lactose transport ATP-binding protein LacK; SMART: AAA ATPase.	PFAM: ABC-type transporter, integral membrane subunit; KEGG: permease component of ABC-type sugar transporter.	0.801
EUB96660.1	EUB96664.1	PMI07_001559	PMI07_001563	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: lacK1, Lactose transport ATP-binding protein LacK; SMART: AAA ATPase.	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease.	0.786
EUB96660.1	EUB99581.1	PMI07_001559	PMI07_005862	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: lacK1, Lactose transport ATP-binding protein LacK; SMART: AAA ATPase.	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease.	0.685
EUB96660.1	EUB99582.1	PMI07_001559	PMI07_005863	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: lacK1, Lactose transport ATP-binding protein LacK; SMART: AAA ATPase.	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter, permease.	0.729
EUB96660.1	EUB99583.1	PMI07_001559	PMI07_005864	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: lacK1, Lactose transport ATP-binding protein LacK; SMART: AAA ATPase.	PFAM: extracellular solute-binding protein family 1; KEGG: extracellular solute-binding protein.	0.436
EUB96662.1	EUB96660.1	PMI07_001561	PMI07_001559	Hypothetical protein; KEGG: ABC transporter substrate-binding protein.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: lacK1, Lactose transport ATP-binding protein LacK; SMART: AAA ATPase.	0.733
EUB96662.1	EUB96663.1	PMI07_001561	PMI07_001562	Hypothetical protein; KEGG: ABC transporter substrate-binding protein.	PFAM: ABC-type transporter, integral membrane subunit; KEGG: permease component of ABC-type sugar transporter.	0.893
EUB96662.1	EUB96664.1	PMI07_001561	PMI07_001563	Hypothetical protein; KEGG: ABC transporter substrate-binding protein.	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease.	0.778
EUB96662.1	EUB99581.1	PMI07_001561	PMI07_005862	Hypothetical protein; KEGG: ABC transporter substrate-binding protein.	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease.	0.525
EUB96662.1	EUB99582.1	PMI07_001561	PMI07_005863	Hypothetical protein; KEGG: ABC transporter substrate-binding protein.	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter, permease.	0.600
EUB96662.1	EUB99583.1	PMI07_001561	PMI07_005864	Hypothetical protein; KEGG: ABC transporter substrate-binding protein.	PFAM: extracellular solute-binding protein family 1; KEGG: extracellular solute-binding protein.	0.533
EUB96662.1	EUB99585.1	PMI07_001561	PMI07_005866	Hypothetical protein; KEGG: ABC transporter substrate-binding protein.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: sugar ABC transporter ATPase; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.436
EUB96663.1	EUB96660.1	PMI07_001562	PMI07_001559	PFAM: ABC-type transporter, integral membrane subunit; KEGG: permease component of ABC-type sugar transporter.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: lacK1, Lactose transport ATP-binding protein LacK; SMART: AAA ATPase.	0.801
EUB96663.1	EUB96662.1	PMI07_001562	PMI07_001561	PFAM: ABC-type transporter, integral membrane subunit; KEGG: permease component of ABC-type sugar transporter.	Hypothetical protein; KEGG: ABC transporter substrate-binding protein.	0.893
EUB96663.1	EUB96664.1	PMI07_001562	PMI07_001563	PFAM: ABC-type transporter, integral membrane subunit; KEGG: permease component of ABC-type sugar transporter.	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease.	0.970
EUB96663.1	EUB99582.1	PMI07_001562	PMI07_005863	PFAM: ABC-type transporter, integral membrane subunit; KEGG: permease component of ABC-type sugar transporter.	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter, permease.	0.882
EUB96663.1	EUB99583.1	PMI07_001562	PMI07_005864	PFAM: ABC-type transporter, integral membrane subunit; KEGG: permease component of ABC-type sugar transporter.	PFAM: extracellular solute-binding protein family 1; KEGG: extracellular solute-binding protein.	0.584
EUB96663.1	EUB99585.1	PMI07_001562	PMI07_005866	PFAM: ABC-type transporter, integral membrane subunit; KEGG: permease component of ABC-type sugar transporter.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: sugar ABC transporter ATPase; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.	0.757
EUB96664.1	EUB96660.1	PMI07_001563	PMI07_001559	PFAM: ABC-type transporter, integral membrane subunit; KEGG: sugar ABC transporter permease.	Glycerol-3-phosphate-transporting ATPase; PFAM: ABC transporter related protein, Transport-associated OB domain-containing protein; KEGG: lacK1, Lactose transport ATP-binding protein LacK; SMART: AAA ATPase.	0.786