STRINGSTRING
paaA paaA paaB paaB paaC paaC paaD paaD paaE paaE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
paaAPhenylacetic acid degradation protein paaA; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (325 aa)
paaBPhenylacetate-CoA oxygenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (121 aa)
paaCPhenylacetic acid degradation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (303 aa)
paaDPhenylacetic acid degradation protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (168 aa)
paaEPhenylacetic acid degradation NADH oxidoreductase; Function of strongly homologous gene; enzyme. (345 aa)
Your Current Organism:
Blastococcus saxobsidens
NCBI taxonomy Id: 1146883
Other names: B. saxobsidens DD2, Blastococcus saxobsidens DD2, Blastococcus saxobsidens str. DD2, Blastococcus saxobsidens strain DD2
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