STRINGSTRING
oppA oppA oppB oppB oppC oppC oppD oppD oppF2 oppF2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
oppAABC-type oligopeptide transport system, substrate-binding component; Function of strongly homologous gene; transporter. (551 aa)
oppBOligopeptide ABC transporter permease subunit, substrate-binding; Function of strongly homologous gene; transporter. (307 aa)
oppCABC dipeptide transporter permease protein; Function of strongly homologous gene; transporter. (317 aa)
oppDOligopeptide transport protein (ABC superfamily, ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ABC transporter superfamily. (354 aa)
oppF2Oligopeptide transport protein (ABC superfamily, ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the ABC transporter superfamily. (360 aa)
Your Current Organism:
Blastococcus saxobsidens
NCBI taxonomy Id: 1146883
Other names: B. saxobsidens DD2, Blastococcus saxobsidens DD2, Blastococcus saxobsidens str. DD2, Blastococcus saxobsidens strain DD2
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