(7 nodes) Mixed, incl. Ferredoxin [2Fe-2S], plant, and Riboflavin synthase-like beta-barrel network (Synechocystis sp. PCC6803)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	petJ	Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. (120 aa)
	petF	Ferredoxin; ORF_ID:slr1828. (106 aa)
	petF-2	Ferredoxin; ORF_ID:sll1382. (122 aa)
	petH	ferredoxin-NADP oxidoreductase; Essential for growth; Belongs to the ferredoxin--NADP reductase type 1 family. (413 aa)
	petE	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family. (126 aa)
	slr0601	ORF_ID:slr0601; unknown protein. (128 aa)
	slr0602	ORF_ID:slr0602; unknown protein. (129 aa)

Your Current Organism:

Synechocystis sp. PCC6803

NCBI taxonomy Id: 1148
Other names: Aphanocapsa sp. (strain N-1), Aphanocapsa sp. N-1, S. sp. PCC 6803, Synechocystis sp. (ATCC 27184), Synechocystis sp. (PCC 6803), Synechocystis sp. (strain PCC 6803), Synechocystis sp. ATCC 27184, Synechocystis sp. PCC 6803, Synechocystis sp. PCC 6803 A, Synechocystis sp. PCC 6803 B

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
petE	petF	gene:10499726	gene:10498292	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	Ferredoxin; ORF_ID:slr1828.	0.780
petE	petF-2	gene:10499726	gene:10499122	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	Ferredoxin; ORF_ID:sll1382.	0.780
petE	petH	gene:10499726	gene:10499336	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	ferredoxin-NADP oxidoreductase; Essential for growth; Belongs to the ferredoxin--NADP reductase type 1 family.	0.640
petE	petJ	gene:10499726	gene:10498217	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.	0.881
petE	slr0601	gene:10499726	gene:10500639	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	ORF_ID:slr0601; unknown protein.	0.680
petE	slr0602	gene:10499726	gene:10500640	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	ORF_ID:slr0602; unknown protein.	0.787
petF	petE	gene:10498292	gene:10499726	Ferredoxin; ORF_ID:slr1828.	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	0.780
petF	petH	gene:10498292	gene:10499336	Ferredoxin; ORF_ID:slr1828.	ferredoxin-NADP oxidoreductase; Essential for growth; Belongs to the ferredoxin--NADP reductase type 1 family.	0.915
petF-2	petE	gene:10499122	gene:10499726	Ferredoxin; ORF_ID:sll1382.	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	0.780
petF-2	petH	gene:10499122	gene:10499336	Ferredoxin; ORF_ID:sll1382.	ferredoxin-NADP oxidoreductase; Essential for growth; Belongs to the ferredoxin--NADP reductase type 1 family.	0.915
petH	petE	gene:10499336	gene:10499726	ferredoxin-NADP oxidoreductase; Essential for growth; Belongs to the ferredoxin--NADP reductase type 1 family.	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	0.640
petH	petF	gene:10499336	gene:10498292	ferredoxin-NADP oxidoreductase; Essential for growth; Belongs to the ferredoxin--NADP reductase type 1 family.	Ferredoxin; ORF_ID:slr1828.	0.915
petH	petF-2	gene:10499336	gene:10499122	ferredoxin-NADP oxidoreductase; Essential for growth; Belongs to the ferredoxin--NADP reductase type 1 family.	Ferredoxin; ORF_ID:sll1382.	0.915
petH	petJ	gene:10499336	gene:10498217	ferredoxin-NADP oxidoreductase; Essential for growth; Belongs to the ferredoxin--NADP reductase type 1 family.	Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.	0.741
petJ	petE	gene:10498217	gene:10499726	Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	0.881
petJ	petH	gene:10498217	gene:10499336	Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.	ferredoxin-NADP oxidoreductase; Essential for growth; Belongs to the ferredoxin--NADP reductase type 1 family.	0.741
petJ	slr0601	gene:10498217	gene:10500639	Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.	ORF_ID:slr0601; unknown protein.	0.678
petJ	slr0602	gene:10498217	gene:10500640	Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.	ORF_ID:slr0602; unknown protein.	0.676
slr0601	petE	gene:10500639	gene:10499726	ORF_ID:slr0601; unknown protein.	Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I; Belongs to the plastocyanin family.	0.680
slr0601	petJ	gene:10500639	gene:10498217	ORF_ID:slr0601; unknown protein.	Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.	0.678

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