Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cynS | glnA | gene:10499950 | gene:10497916 | Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia. | 0.471 |
| cynS | nirA | gene:10499950 | gene:10499949 | Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. | Ferredoxin--nitrite reductase; ORF_ID:slr0898; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.833 |
| cynS | ntcA | gene:10499950 | gene:10498881 | Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. | Global nitrogen regulator; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.673 |
| glnA | cynS | gene:10497916 | gene:10499950 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia. | Cyanate lyase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family. | 0.471 |
| glnA | icd | gene:10497916 | gene:10497693 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia. | Isocitrate dehydrogenase (NADP+); ORF_ID:slr1289. | 0.858 |
| glnA | narB | gene:10497916 | gene:10498353 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia. | Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria. | 0.767 |
| glnA | nirA | gene:10497916 | gene:10499949 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia. | Ferredoxin--nitrite reductase; ORF_ID:slr0898; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.981 |
| glnA | ntcA | gene:10497916 | gene:10498881 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia. | Global nitrogen regulator; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.928 |
| glnA | rbcL | gene:10497916 | gene:10499687 | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia. | Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. Belongs to the RuBisCO large chain family. Type I subfamily. | 0.640 |
| icd | glnA | gene:10497693 | gene:10497916 | Isocitrate dehydrogenase (NADP+); ORF_ID:slr1289. | Glutamate--ammonia ligase; Involved in nitrogen metabolism via ammonium assimilation. Catalyzes the ATP-dependent biosynthesis of glutamine from glutamate and ammonia. | 0.858 |
| icd | ndh-3 | gene:10497693 | gene:10500494 | Isocitrate dehydrogenase (NADP+); ORF_ID:slr1289. | NADH dehydrogenase; ORF_ID:sll1484. | 0.421 |
| icd | nirA | gene:10497693 | gene:10499949 | Isocitrate dehydrogenase (NADP+); ORF_ID:slr1289. | Ferredoxin--nitrite reductase; ORF_ID:slr0898; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. | 0.587 |
| icd | ntcA | gene:10497693 | gene:10498881 | Isocitrate dehydrogenase (NADP+); ORF_ID:slr1289. | Global nitrogen regulator; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.835 |
| isiB | petF | gene:10498816 | gene:10498292 | Flavodoxin; Low-potential electron donor to a number of redox enzymes. | Ferredoxin; ORF_ID:slr1828. | 0.562 |
| isiB | petF-2 | gene:10498816 | gene:10499122 | Flavodoxin; Low-potential electron donor to a number of redox enzymes. | Ferredoxin; ORF_ID:sll1382. | 0.632 |
| isiB | petF-3 | gene:10498816 | gene:10499432 | Flavodoxin; Low-potential electron donor to a number of redox enzymes. | Ferredoxin; ORF_ID:slr0150. | 0.562 |
| isiB | petF-4 | gene:10498816 | gene:10499694 | Flavodoxin; Low-potential electron donor to a number of redox enzymes. | Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | 0.632 |
| lrtA | rpoD-2 | gene:10499505 | gene:10498624 | Light repressed protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.410 |
| murC | ntcA | gene:10500399 | gene:10498881 | UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | Global nitrogen regulator; Required for full expression of proteins subject to ammonium repression. Transcriptional activator of genes subject to nitrogen control. | 0.401 |
| murC | slr1424 | gene:10500399 | gene:10500400 | UDP-N-acetylmuramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. | 0.999 |
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